Jatropha Genome Database

JcCB0184671.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0184671.10 + phase: 0 
         (52 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29269.m000246 protein translocase, putative                            90   2e-19

>29269.m000246 protein translocase, putative
          Length = 159

 Score = 90.1 bits (222), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 44/47 (93%), Positives = 46/47 (97%)

Query: 5   RSISTAISAGAALAVTSAVIDAGGQTTRIDNGKEYYPYTTKKRSTAE 51
           RSISTA+SAGAALAVTSA+IDAGGQTTRIDNGKEYYPYTTKKRST E
Sbjct: 112 RSISTAMSAGAALAVTSALIDAGGQTTRIDNGKEYYPYTTKKRSTVE 158