Jatropha Genome Database

JcCB0183721.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0183721.10 - phase: 2 /partial
         (310 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

28966.m000547 Cysteine protease ATG4B, putative                       525   e-149

>28966.m000547 Cysteine protease ATG4B, putative
          Length = 489

 Score =  525 bits (1351), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 259/329 (78%), Positives = 279/329 (84%), Gaps = 21/329 (6%)

Query: 1   LWSSFFTAAFSVFETYRESPPTTSEKKGSHTRNNGWTSAVKKIVAGGSMRRIHERVLGPS 60
           LWSSFF +AFSVFETYRESPP  SEKKGSH+R+NGWTSAVKKIV+GGSMRRIHERVLGPS
Sbjct: 42  LWSSFFASAFSVFETYRESPPA-SEKKGSHSRHNGWTSAVKKIVSGGSMRRIHERVLGPS 100

Query: 61  RTGISNTTSEIWLLGVCYKISQDGS-NADAATS-------------------FDAIGDSK 100
           RTGIS+TTS+IWLLGVCYKIS+D S NAD   +                   FDAIGDSK
Sbjct: 101 RTGISSTTSDIWLLGVCYKISEDESGNADTGNALAEFTHDYSSRILMTYRRGFDAIGDSK 160

Query: 101 FTSDVGWGCMLRSSQMLVAQALLFHQLGRSWRKPIQKPLDQKYVEILHLFGDSEASPFSI 160
           + SDVGWGCMLRSSQMLVAQALLFH+LGR+W KP QKP+DQ YVEILHLFGDSEA+PFSI
Sbjct: 161 YISDVGWGCMLRSSQMLVAQALLFHKLGRAWTKPFQKPMDQAYVEILHLFGDSEAAPFSI 220

Query: 161 HNLIHAGKAYGLAAGSWVGPYAMCRSWELLARCKREENNLEHEALPMAVYVVSGDEDGER 220
           HNLI AGKAY LAAGSWVGPYAMCRSWE LAR KREEN+LE+++LPMAVYVVSGDEDGER
Sbjct: 221 HNLIQAGKAYSLAAGSWVGPYAMCRSWESLARSKREENSLEYQSLPMAVYVVSGDEDGER 280

Query: 221 GGAPVVCIEDASRHCLDFSRGQANWTPIXXXXXXXXXXEKVNLRYIPSLQATLTFPQSLG 280
           GGAPVV IEDASRHCL+FSRGQA+WTPI          +KVN RYIPSLQAT TF QSLG
Sbjct: 281 GGAPVVYIEDASRHCLEFSRGQADWTPILLLVPLVLGLDKVNPRYIPSLQATFTFSQSLG 340

Query: 281 IMGGKPGASTYIVGVQDDNAFYLDPHGVQ 309
           IMGGKPGASTYIVGVQDDNAFYLDPH VQ
Sbjct: 341 IMGGKPGASTYIVGVQDDNAFYLDPHEVQ 369