Jatropha Genome Database

JcCB0181351.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0181351.10 - phase: 2 /partial
         (160 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29780.m001322 brg-1 associated factor, putative                       148   9e-37
29676.m001637 Upstream activation factor subunit UAF30, putative      136   5e-33
29724.m000827 brg-1 associated factor, putative                       104   2e-23
29801.m003069 brg-1 associated factor, putative                        71   3e-13
30148.m001413 brg-1 associated factor, putative                        65   2e-11
29780.m001354 brg-1 associated factor, putative                        47   3e-06

>29780.m001322 brg-1 associated factor, putative
          Length = 614

 Score =  148 bits (374), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 68/81 (83%), Positives = 73/81 (90%)

Query: 75  FTKLCSLSPQLQEFIGESELARTEVVKRLWAYIRERNLQDPKNKQNIICDESLHALFHVN 134
           FTKLCSLSPQLQEF GESELARTEVVK+LW YIRE NLQDPKNK+NI+CDESL  LF V+
Sbjct: 416 FTKLCSLSPQLQEFTGESELARTEVVKKLWIYIRENNLQDPKNKRNILCDESLRTLFRVD 475

Query: 135 SINMFQMNKALSKHIWPLNEE 155
            INMFQMNK LSKHIWPL+EE
Sbjct: 476 CINMFQMNKVLSKHIWPLDEE 496



 Score =  147 bits (372), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 68/81 (83%), Positives = 74/81 (91%)

Query: 75  FTKLCSLSPQLQEFIGESELARTEVVKRLWAYIRERNLQDPKNKQNIICDESLHALFHVN 134
           FTKLCSLSPQLQEFIGES+ ARTEVVK+LW YIRE NLQDPKN++ I+CDESL ALF V+
Sbjct: 267 FTKLCSLSPQLQEFIGESKSARTEVVKKLWVYIRENNLQDPKNRRIILCDESLRALFRVD 326

Query: 135 SINMFQMNKALSKHIWPLNEE 155
           SINMFQMNK LSKHIWPLNEE
Sbjct: 327 SINMFQMNKVLSKHIWPLNEE 347



 Score =  136 bits (343), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 63/86 (73%), Positives = 71/86 (82%)

Query: 75  FTKLCSLSPQLQEFIGESELARTEVVKRLWAYIRERNLQDPKNKQNIICDESLHALFHVN 134
           FT LCSLSPQL +F+G SELARTEVVK+LWAYIRE +LQDPKN++ I CDE+L  LF VN
Sbjct: 119 FTMLCSLSPQLHKFVGVSELARTEVVKKLWAYIRENDLQDPKNRRIIKCDEALRDLFRVN 178

Query: 135 SINMFQMNKALSKHIWPLNEEGMCPN 160
           SINMFQMNKALSKHIWPL  +    N
Sbjct: 179 SINMFQMNKALSKHIWPLTAQAEASN 204



 Score = 77.0 bits (188), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 35/71 (49%), Positives = 51/71 (71%), Gaps = 2/71 (2%)

Query: 81  LSPQLQEFIG--ESELARTEVVKRLWAYIRERNLQDPKNKQNIICDESLHALFHVNSINM 138
           LS  L +FIG  E+EL+R +VVKR+W YI++ +LQDP +K+ I+CD+ L  LF V+S N 
Sbjct: 539 LSDPLVKFIGTGENELSRADVVKRIWGYIKQNDLQDPSDKRRILCDDKLKELFEVDSFNG 598

Query: 139 FQMNKALSKHI 149
           F ++K L+ H 
Sbjct: 599 FSVSKLLTAHF 609


>29676.m001637 Upstream activation factor subunit UAF30, putative
          Length = 322

 Score =  136 bits (342), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 59/85 (69%), Positives = 72/85 (84%)

Query: 75  FTKLCSLSPQLQEFIGESELARTEVVKRLWAYIRERNLQDPKNKQNIICDESLHALFHVN 134
           F+KLCSLSPQLQE  G  +LARTEVVK+LW++IRE+ LQDP N++NIICDE   ALF V+
Sbjct: 124 FSKLCSLSPQLQELTGVPQLARTEVVKQLWSHIREKKLQDPNNRRNIICDEPFRALFGVD 183

Query: 135 SINMFQMNKALSKHIWPLNEEGMCP 159
           SI+MFQMNK LSKHIWPL+ +G+ P
Sbjct: 184 SIDMFQMNKVLSKHIWPLDSDGVVP 208



 Score = 75.1 bits (183), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 35/71 (49%), Positives = 47/71 (66%), Gaps = 2/71 (2%)

Query: 81  LSPQLQEFIGESE--LARTEVVKRLWAYIRERNLQDPKNKQNIICDESLHALFHVNSINM 138
           LS  L +F G  E  L+R +V+KR+W YI++ NLQDP +K+ IICDE L  LF V++ N 
Sbjct: 249 LSDALIKFFGTGENALSRADVIKRMWEYIKQNNLQDPSDKRRIICDEKLKELFDVDTFNG 308

Query: 139 FQMNKALSKHI 149
           F + K LS H 
Sbjct: 309 FTVTKLLSAHF 319


>29724.m000827 brg-1 associated factor, putative
          Length = 397

 Score =  104 bits (259), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 44/78 (56%), Positives = 59/78 (75%)

Query: 75  FTKLCSLSPQLQEFIGESELARTEVVKRLWAYIRERNLQDPKNKQNIICDESLHALFHVN 134
             K+C +SP+LQ  +GE  L RTE+VK+LWAYIR+ NLQDP NK+ IICD++L  +F  +
Sbjct: 213 LNKVCGVSPELQAIVGEPALPRTEIVKQLWAYIRKNNLQDPSNKRKIICDDALRVVFETD 272

Query: 135 SINMFQMNKALSKHIWPL 152
             +MF+MNK L+KHI PL
Sbjct: 273 CTDMFKMNKLLAKHIIPL 290



 Score = 46.6 bits (109), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 2/70 (2%)

Query: 81  LSPQLQEFIGES--ELARTEVVKRLWAYIRERNLQDPKNKQNIICDESLHALFHVNSINM 138
           +S  L +F+G    E+ + E  +R+W YI+   L+DP N   I+CD  L  L    SI+ 
Sbjct: 322 ISEALAKFLGTGGREMTQLEASRRVWEYIKVNRLEDPLNSMVILCDAKLRELLGCESISA 381

Query: 139 FQMNKALSKH 148
             + + L++H
Sbjct: 382 VGVEEMLARH 391


>29801.m003069 brg-1 associated factor, putative
          Length = 141

 Score = 70.9 bits (172), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 48/69 (69%), Gaps = 1/69 (1%)

Query: 81  LSPQLQEFIGESELARTEVVKRLWAYIRERNLQDPKNKQNIICDESLHALFHV-NSINMF 139
           +SP++ E +G SE+ RT+ +KR+WA+I+E NLQDP+NK+ IICDE L  +F   + +   
Sbjct: 70  VSPEMAELVGASEIPRTQALKRIWAHIKENNLQDPENKKIIICDEKLKKIFGGRDRVGFL 129

Query: 140 QMNKALSKH 148
           ++   +S H
Sbjct: 130 EVAGLISPH 138


>30148.m001413 brg-1 associated factor, putative
          Length = 134

 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 31/75 (41%), Positives = 46/75 (61%), Gaps = 2/75 (2%)

Query: 77  KLCSLSPQLQEFIGE-SELARTEVVKRLWAYIRERNLQDPKNKQNIICDESLHALFHVN- 134
           K   +SP L EF+G   E +RT+VVK++W +I+  NLQ+P NK+ I CDE L  +F    
Sbjct: 56  KAAPVSPALSEFLGGVPEASRTDVVKKIWDHIKLHNLQNPTNKKEIFCDEKLKTIFDGKE 115

Query: 135 SINMFQMNKALSKHI 149
            +   ++ K LS+H 
Sbjct: 116 KVGFLEIGKLLSRHF 130


>29780.m001354 brg-1 associated factor, putative
          Length = 572

 Score = 47.0 bits (110), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 37/69 (53%)

Query: 81  LSPQLQEFIGESELARTEVVKRLWAYIRERNLQDPKNKQNIICDESLHALFHVNSINMFQ 140
           LSP L E +G     R  ++  +W Y++ R LQ+P++     CD  LH +F    +    
Sbjct: 359 LSPALMEVLGIEVDTRPRIIAAIWHYVKARKLQNPEDPSFFNCDPPLHKVFGEAKMKFTM 418

Query: 141 MNKALSKHI 149
           +++ +S+H+
Sbjct: 419 VSQKISQHL 427