Jatropha Genome Database

JcCB0180631.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0180631.20 - phase: 0 /pseudo
         (278 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29751.m001829 ubiquitin-protein ligase, putative                       76   2e-14
29904.m002893 ubiquitin-protein ligase, putative                       73   1e-13
30027.m000838 ubiquitin-protein ligase, putative                       69   2e-12
29630.m000832 ubiquitin-protein ligase, putative                       68   4e-12
29904.m002894 ubiquitin-protein ligase, putative                       62   4e-10
29206.m000142 conserved hypothetical protein                           57   1e-08
29806.m000946 conserved hypothetical protein                           55   4e-08
29939.m000543 hypothetical protein                                     55   5e-08
29907.m000633 hypothetical protein                                     52   4e-07

>29751.m001829 ubiquitin-protein ligase, putative
          Length = 358

 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 108/230 (46%), Gaps = 68/230 (29%)

Query: 8   EIVGQIFSKLPAKSLLRFKCLSKSLNSLISSPNFIRSHV-------PRSQGDLPKY---- 56
           +I+  +  +LP K+LLRF+C+SKS  +LI +P+FI++H+       PR +  L ++    
Sbjct: 7   DIIFDVLLRLPVKTLLRFRCISKSYCTLIDNPDFIKAHLDTSIQTKPRKKLILLRHQSNG 66

Query: 57  VCGSYFFDVNTA-VEAKPVKSPLKQQMPFLNQTNHKILCSCDGVILLRARINTPTLYSKD 115
           V   Y  D N   ++   +KSP+K +         +I+ SC+ ++LL    NT  L    
Sbjct: 67  VAEFYAADHNGGLIDPIKLKSPIKSK-----SNGTRIVGSCNSLVLLMQ--NTDKL---- 115

Query: 116 NEANALRMCXXXXXXXXXXXXXXXXXXXYYSIIVWNPLIREYRIFPMPE------SGDYV 169
                                           ++WNP   +Y+I P P+      +  Y+
Sbjct: 116 --------------------------------LLWNPFTTQYKILPEPQREKATFTSQYL 143

Query: 170 SY---GLGYDSVTDDYKVVQCGISKNHLIKXNALIVLSLKSNS-MRKHEI 215
            Y   GLGYD+ +DDYKVV+    ++   K + + + SL+SNS  R H+ 
Sbjct: 144 QYDVFGLGYDAASDDYKVVRIQKCRS---KKDGVGIYSLRSNSWTRLHDF 190


>29904.m002893 ubiquitin-protein ligase, putative
          Length = 406

 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 97/225 (43%), Gaps = 55/225 (24%)

Query: 5   VPEEIVGQIFSKLPAKSLLRFKCLSKSLNSLISSPNFIRSHVPRSQGD------------ 52
           +PE+++ +I S++P K LLRFKC+SKS NS+IS P F +  + R++ +            
Sbjct: 53  LPEDLIVEILSRVPVKPLLRFKCVSKSWNSIISDPRFAKLQLKRAKENSNISCNRLLLST 112

Query: 53  -LPKYVCGSYFFDVNTAVEAKPVKSPLKQQMPFLNQTNHKILCSCDGVILLRARINTPTL 111
             P+ +    F D + +     V  P   + P       +IL SCDG++ L         
Sbjct: 113 WSPRSLDFEAFCDDDLSNTITNVSFPAIVKGPPTFYV--RILGSCDGLVCL--------- 161

Query: 112 YSKDNEANALRMCXXXXXXXXXXXXXXXXXXXYYSIIVWNPLIREYRIFPMPESGDYVSY 171
                                           Y ++ +WNP  R+Y+  P P+   Y  +
Sbjct: 162 -----------------------------LDDYGTMFLWNPTTRQYKELPKPKGAVYRMF 192

Query: 172 --GLGYDSVTDDYKVVQCGISKNHLIKXNALIVLSLKSNSMRKHE 214
             G+GY+  TDDY VV      +   +   + + +LK+N+ RK E
Sbjct: 193 LHGIGYNFSTDDYGVVFASRFTDDGNEETTVELYTLKNNTWRKIE 237


>30027.m000838 ubiquitin-protein ligase, putative
          Length = 351

 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 100/224 (44%), Gaps = 43/224 (19%)

Query: 3   IRVPEEIVGQIFSKLPAKSLLRFKCLSKSLNSLISSPNFIRSH-------VPRSQGDLPK 55
           + +P E+V +I +KLP KSL+RFK +SKSL+S+I+   F++ H       +  S      
Sbjct: 1   MSIPVELVVEILAKLPVKSLMRFKSVSKSLHSIITDSEFVKLHSGPGRLLLVTSASKFQS 60

Query: 56  YVCGSYFFDVNTAVEAKPVKSPLKQQMPFLNQTNHKILCSCDGVILL--RARINTPTLYS 113
             C   + + +     + +  P    + + +  +  +  SC+G+I L    R+N   L +
Sbjct: 61  ITCEVLWGNSSGNHIIQNLDHPWDGDLEYYH--DFYVHGSCNGLICLDIHERLNFYGLCN 118

Query: 114 KDNEANALRMCXXXXXXXXXXXXXXXXXXXYYSIIVWNPLIREYRIFPMPE--SGDYVSY 171
           + +                              + +WNP   +++  P     S  + + 
Sbjct: 119 RRD------------------------------LYLWNPTTNDFKALPTTSDISIMFNNV 148

Query: 172 GLGYDSVTDDYKVVQCGISKNHLIKXNALIVLSLKSNSMRKHEI 215
           G GYD+  DDYKVV    S   L +   +++ +LK+NS R+ EI
Sbjct: 149 GFGYDNSIDDYKVVVIDRSTCELKRTRYIMIFTLKTNSWRRKEI 192


>29630.m000832 ubiquitin-protein ligase, putative
          Length = 414

 Score = 68.2 bits (165), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 99/226 (43%), Gaps = 55/226 (24%)

Query: 4   RVPEEIVGQIFSKLPAKSLLRFKCLSKSLNSLISSPNFIRSHVPRSQ---GDLPKYVCGS 60
           ++P E++ +I ++LP   LLRF+ +SKS  + I  PNFI++H+ +S+    +L     GS
Sbjct: 4   KLPPELLTEILTRLPVDCLLRFRSISKSWCAKIDDPNFIKTHLKKSRETNSNLTLIFAGS 63

Query: 61  ---YFFDVNTAVEAKPVKSPLKQQMPFLNQTNHKILCSCDGVILLRARINTPTLYSKDNE 117
              YF++VN       +K     + P     N KI+ SC+G++                 
Sbjct: 64  HPDYFYNVNLDSLNSIIKLENPIKGPTDASHNIKIVGSCNGLLCF--------------- 108

Query: 118 ANALRMCXXXXXXXXXXXXXXXXXXXYYSIIVWNPLIREYRIFPMPESGDYV-------- 169
            NA                          I + NP  R++++ P       V        
Sbjct: 109 GNA-----------------------SGRITLMNPSTRKHKVLPFLRMDASVKGKSVWGA 145

Query: 170 -SYGLGYDSVTDDYKVVQCGISKNHLIK--XNALIVLSLKSNSMRK 212
            ++G G DSV DDYKV++ G   +  ++      +V SLKSNS RK
Sbjct: 146 WAFGFGCDSVHDDYKVIRLGQYLDFSLQQFETDTMVYSLKSNSWRK 191


>29904.m002894 ubiquitin-protein ligase, putative
          Length = 257

 Score = 61.6 bits (148), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 49/201 (24%), Positives = 88/201 (43%), Gaps = 60/201 (29%)

Query: 4   RVPEEIVGQIFSKLPAKSLLRFKCLSKSLNSLISSPNFIRSHVPRSQGD----------L 53
           ++P++++ +I S++P K L+RFKC+ K+ NSLIS+P F +  + R++ +          L
Sbjct: 3   KLPQDLITEILSRVPVKPLIRFKCICKTWNSLISNPEFAKLQLKRAKENNNVSNHYRLLL 62

Query: 54  PKYVCGSYFF------DVNTAVEAKPVKSPLKQQMPFLNQTNHKILCSCDGVILLRARIN 107
             +   S  +      D++ A+      +  K      +  + +IL SCDG++ L    +
Sbjct: 63  ATWPPQSLDYEAYCNDDISNALRKLSYHAIAKDPN---DNYDVRILGSCDGLVYLYNEYH 119

Query: 108 TPTLYSKDNEANALRMCXXXXXXXXXXXXXXXXXXXYYSIIVWNPLIREYRIFPMPES-- 165
                                                 S+ +WNP I +Y+  P P    
Sbjct: 120 D-------------------------------------SMFLWNPTIGDYKELPKPNGAF 142

Query: 166 -GDYVSYGLGYDSVTDDYKVV 185
            G Y+ YG+GY+   DDY+V+
Sbjct: 143 HGMYL-YGIGYNVNNDDYEVL 162


>29206.m000142 conserved hypothetical protein
          Length = 395

 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/196 (27%), Positives = 85/196 (43%), Gaps = 52/196 (26%)

Query: 4   RVPEEIVGQIFSKLPAKSLLRFKCLSKSLNSLISSPNFIRSHV-----PRSQGDLPKYVC 58
           ++P++IV  +   LP K+LLRF+CLSK L SLI SP+FI  H+      RS   L     
Sbjct: 3   KIPDDIVSDVLLLLPVKALLRFRCLSKPLCSLIDSPDFIDHHLSHSLKTRSNLFLILRDW 62

Query: 59  GSYFFDVNTAVEAKPVKSPLKQQMPFLNQTNHKILCSCDGVILLRARINTPTLYSKDNEA 118
             Y  D ++     P  + +    P       + + SC+G++ LR               
Sbjct: 63  NLYTLDFDSLSSVSPAAADVLIH-PLQKGGGTEAVGSCNGLLALR--------------- 106

Query: 119 NALRMCXXXXXXXXXXXXXXXXXXXYYSIIVWNPLIREYRIFPMPE--------SGDYVS 170
           N+ R                        + ++NP  R+Y+  P+ E           YV 
Sbjct: 107 NSER-----------------------DLALYNPATRKYKRVPVSEIEPPDRNSKTGYVF 143

Query: 171 YGLGYDSVTDDYKVVQ 186
           YG G+DSV++DY++++
Sbjct: 144 YGFGFDSVSEDYRLIR 159


>29806.m000946 conserved hypothetical protein
          Length = 371

 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 46/197 (23%), Positives = 84/197 (42%), Gaps = 56/197 (28%)

Query: 5   VPEEIVGQIFSKLPAKSLLRFKCLSKSLNSLISSPNFIRSHVPRS--------------Q 50
           +P+EI+ +I  +LP KSLL+++C+ +S +SLI++ +FI +H+  S              Q
Sbjct: 5   IPQEILIEILKRLPVKSLLKYRCVCQSWHSLITNSSFISTHINHSIECNNRVHSYALVKQ 64

Query: 51  GDLPKYVCGSYF-FDVNTAVEAKPVKSPLKQQMPFLNQTNHKILCSCDGVILLRARINTP 109
             +P   C   F   ++     +P +   +   PF  +   +I+ SC+G++ L       
Sbjct: 65  KSVPD--CKERFILYIDDDSGDEPFRVYQELDFPFKGERYLEIISSCNGLVCL------- 115

Query: 110 TLYSKDNEANALRMCXXXXXXXXXXXXXXXXXXXYYSIIVWNPLIREYRIFPMPESGDYV 169
                D++                          Y    +WNP+IR  +   +  S    
Sbjct: 116 ----SDSQ--------------------------YARFYLWNPVIR--KCLTILSSDSSF 143

Query: 170 SYGLGYDSVTDDYKVVQ 186
             G G++   +DYKVV+
Sbjct: 144 IVGFGFEYKKNDYKVVK 160


>29939.m000543 hypothetical protein
          Length = 408

 Score = 54.7 bits (130), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 53/106 (50%), Gaps = 10/106 (9%)

Query: 7   EEIVGQIFSKLPAKSLLRFKCLSKSLNSLISSPNFIRSHVPRSQGDLPKYVCGSYFFDVN 66
           E++V +I  ++P K LLR KC+SK   SLIS P+F  SH    Q   P+    + F DVN
Sbjct: 12  EDLVIEILLRVPTKELLRCKCVSKQWLSLISDPHFCASHSRFQQSFNPRIT--ALFLDVN 69

Query: 67  TAVE--------AKPVKSPLKQQMPFLNQTNHKILCSCDGVILLRA 104
             +         + P  S       + N    KIL SC+G++L R+
Sbjct: 70  KHIPEFQVIPLVSSPFTSGAFVVKDYFNVRRAKILQSCNGLLLCRS 115


>29907.m000633 hypothetical protein
          Length = 147

 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 25/42 (59%), Positives = 31/42 (73%)

Query: 5  VPEEIVGQIFSKLPAKSLLRFKCLSKSLNSLISSPNFIRSHV 46
          VPE+I   I  +LP K LLRFKC+SK+  SLIS P FI+SH+
Sbjct: 4  VPEDIAIDILLRLPVKPLLRFKCVSKTWYSLISDPCFIKSHL 45