Jatropha Genome Database

JcCB0176661.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0176661.20 + phase: 0 
         (193 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30131.m006989 conserved hypothetical protein                          239   6e-64

>30131.m006989 conserved hypothetical protein
          Length = 194

 Score =  239 bits (610), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 123/180 (68%), Positives = 138/180 (76%), Gaps = 3/180 (1%)

Query: 1   MACTIDFRCLDEGFGGKTYKRKREAQSLAAT--GDVDGSMEIDGETL-PPAAKRSAVASI 57
           MACTIDFRCLDEGFGGKTYKRKRE+Q  + +  G+ D SMEID  T+ PP AKRSA+ S 
Sbjct: 1   MACTIDFRCLDEGFGGKTYKRKRESQFQSQSQSGNDDASMEIDESTVVPPPAKRSALEST 60

Query: 58  ENPDKPVFGQPTYDGVIGGKVSGRKWKQARKQRASAKLVSIKGTTFEERERQKEIKRAYR 117
           ENP+KPV+G PTYDGVI G+ SGRKWKQ RKQRASAK VS+KGTTFEERERQKEIK+AYR
Sbjct: 61  ENPNKPVYGNPTYDGVIAGRASGRKWKQVRKQRASAKHVSVKGTTFEERERQKEIKKAYR 120

Query: 118 ERMNELKDXXXXXXXXXXXXXXXXXXXXXXXXLRSGTKLQKITNPKTLKKIAKSKDRKLL 177
           ER+NELK+                        L+SGTKLQKITNPKTLKKI+KSKDRKLL
Sbjct: 121 ERINELKEEIRRNKQEKRKQREEREKKKQENILKSGTKLQKITNPKTLKKISKSKDRKLL 180