Jatropha Genome Database
- JcCB0175111.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0175111.10 + phase: 0 /partial
(129 letters)
Database: castor_wgs_0.1_aa
31,221 sequences; 10,419,776 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
27996.m000153 DNA binding protein, putative 130 1e-31
30169.m006312 hypothetical protein 89 4e-19
30136.m001043 hypothetical protein 65 6e-12
28609.m000209 DNA binding protein, putative 55 1e-08
30146.m003443 DNA binding protein, putative 54 2e-08
30170.m013749 transcription factor, putative 52 9e-08
28152.m000914 DNA binding protein, putative 51 2e-07
30115.m001220 DNA binding protein, putative 50 2e-07
30170.m013861 transcription factor, putative 50 2e-07
29739.m003684 DNA-directed RNA polymerase beta chain, putative 47 2e-06
>27996.m000153 DNA binding protein, putative
Length = 288
Score = 130 bits (328), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 70/118 (59%), Positives = 90/118 (76%), Gaps = 4/118 (3%)
Query: 7 SVSAQSIAARERRRKITDKTQLLGRLIPGGSKMNTAEMLQAAYKYVKYLQAQLGVLRFLF 66
S+SAQSIAARERRRKIT++TQ LG+LIPGG+KMNTAEMLQ+A YVK+LQAQ+G+L L
Sbjct: 162 SLSAQSIAARERRRKITERTQELGKLIPGGNKMNTAEMLQSASNYVKFLQAQVGILE-LM 220
Query: 67 GSSQLKAKDIK--ELQI-LGSASFQEKLYMQEKCLVPNEIALILTNNQDVNSDTSISD 121
S+Q + +D+ ELQ+ L S++ QEKLY QEKCLVP E + N+ ++ S I D
Sbjct: 221 ESTQERKEDLHRNELQVLLVSSAIQEKLYSQEKCLVPREFLETMANDHEIQSTPFIID 278
>30169.m006312 hypothetical protein
Length = 84
Score = 89.4 bits (220), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 46/70 (65%), Positives = 58/70 (82%), Gaps = 3/70 (4%)
Query: 39 MNTAEMLQAAYKYVKYLQAQLGVLRFLFGSSQLKAKD--IKELQILGSASFQEKLYMQEK 96
MNTAEMLQAA+KYVKYLQAQ+G+L L GSSQ ++ IKEL+IL SA QEKLY++EK
Sbjct: 1 MNTAEMLQAAFKYVKYLQAQVGILENL-GSSQEDKEERRIKELEILASAGIQEKLYLEEK 59
Query: 97 CLVPNEIALI 106
CLVP+E+ ++
Sbjct: 60 CLVPSELEVV 69
>30136.m001043 hypothetical protein
Length = 207
Score = 65.5 bits (158), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 43/56 (76%)
Query: 7 SVSAQSIAARERRRKITDKTQLLGRLIPGGSKMNTAEMLQAAYKYVKYLQAQLGVL 62
S QS+AAR RR +I++K ++L RL+PGG+KM+TA ML A +YVK+L+ Q+ +L
Sbjct: 105 SDDPQSVAARHRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKKQIRLL 160
>28609.m000209 DNA binding protein, putative
Length = 327
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 39/56 (69%)
Query: 7 SVSAQSIAARERRRKITDKTQLLGRLIPGGSKMNTAEMLQAAYKYVKYLQAQLGVL 62
S QSIAA+ RR +I+++ ++L L+P GSK++ ML+ A YVK+LQ Q+ VL
Sbjct: 232 SKDPQSIAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQLQVKVL 287
>30146.m003443 DNA binding protein, putative
Length = 395
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 44/59 (74%)
Query: 7 SVSAQSIAARERRRKITDKTQLLGRLIPGGSKMNTAEMLQAAYKYVKYLQAQLGVLRFL 65
S Q++AAR+RR +I+++ ++L RL+PGGSKM+TA ML A Y+K+L++Q+ L L
Sbjct: 291 STDPQTVAARQRRERISERIRVLQRLVPGGSKMDTASMLDEAANYLKFLRSQVKALENL 349
>30170.m013749 transcription factor, putative
Length = 327
Score = 51.6 bits (122), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 40/56 (71%)
Query: 7 SVSAQSIAARERRRKITDKTQLLGRLIPGGSKMNTAEMLQAAYKYVKYLQAQLGVL 62
+ QS+ AR+RR +I ++ ++L L+P G+K++ + ML+ A +YVK+LQ Q+ +L
Sbjct: 244 ATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVQYVKFLQLQIKLL 299
>28152.m000914 DNA binding protein, putative
Length = 296
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 39/56 (69%)
Query: 7 SVSAQSIAARERRRKITDKTQLLGRLIPGGSKMNTAEMLQAAYKYVKYLQAQLGVL 62
+ QSI AR+RR +I ++ ++L L+P G+K++ + ML+ A YVK+LQ Q+ +L
Sbjct: 214 ATDPQSIYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVHYVKFLQLQIKLL 269
>30115.m001220 DNA binding protein, putative
Length = 278
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 41/56 (73%)
Query: 7 SVSAQSIAARERRRKITDKTQLLGRLIPGGSKMNTAEMLQAAYKYVKYLQAQLGVL 62
S QS+AAR RR +I+++ ++L RL+PGG+KM+TA ML A YVK+L+ Q+ L
Sbjct: 176 SKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQSL 231
>30170.m013861 transcription factor, putative
Length = 274
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 41/56 (73%)
Query: 7 SVSAQSIAARERRRKITDKTQLLGRLIPGGSKMNTAEMLQAAYKYVKYLQAQLGVL 62
S QS+AAR RR +I+++ ++L RL+PGG+KM+TA ML A YVK+L+ Q+ L
Sbjct: 164 SKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVQSL 219
>29739.m003684 DNA-directed RNA polymerase beta chain, putative
Length = 592
Score = 47.0 bits (110), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 35/57 (61%)
Query: 6 RSVSAQSIAARERRRKITDKTQLLGRLIPGGSKMNTAEMLQAAYKYVKYLQAQLGVL 62
++ SIA R RR KI ++ + L L+P SK++ A ML +YVK+LQ Q+ VL
Sbjct: 357 QATDPHSIAERLRREKIAERMKNLQELVPNSSKVDKASMLDEIIEYVKFLQLQVKVL 413