Jatropha Genome Database

JcCB0175021.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0175021.10 + phase: 0 /pseudo
         (131 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29168.m000387 cyclin d, putative                                      193   2e-50
29908.m006232 cyclin d, putative                                       80   3e-16
27749.m000345 cyclin d, putative                                       72   9e-14
29661.m000935 cyclin d, putative                                       61   1e-10
30170.m013822 cyclin d, putative                                       59   6e-10
29801.m003121 cyclin d, putative                                       52   1e-07
29970.m000980 cyclin d, putative                                       50   2e-07
29933.m001448 cyclin d, putative                                       46   5e-06

>29168.m000387 cyclin d, putative
          Length = 386

 Score =  193 bits (491), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 100/114 (87%), Positives = 102/114 (89%), Gaps = 1/114 (0%)

Query: 1   MSLPCSDCFTDLLCSEDSSEIFS-AESPECSSDLESPAFIEESIASFIEDERNFVPGFDY 59
           MSL CSDCF DLLCSEDSSEIFS  +SPE SSDLESPA   ESIASFIEDERNFVPGFDY
Sbjct: 40  MSLSCSDCFNDLLCSEDSSEIFSTGDSPEYSSDLESPAGTVESIASFIEDERNFVPGFDY 99

Query: 60  LSRFQSRSLDASAREESVAWILKVQAYYSFQPLTAYLSVNYLDRFLYSRPLPVS 113
           LSRFQSRSLDASARE+SVAWILKVQ YY FQPLTAYLSVNYLDRFLYSR LP S
Sbjct: 100 LSRFQSRSLDASAREDSVAWILKVQTYYRFQPLTAYLSVNYLDRFLYSRSLPQS 153


>29908.m006232 cyclin d, putative
          Length = 354

 Score = 79.7 bits (195), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 48/135 (35%), Positives = 67/135 (49%), Gaps = 27/135 (20%)

Query: 4   PCSDC-FTDLLCSEDSSEIFSAESPE--CSSDLES------------------------P 36
           P  DC  + LLC+ED+  IF  ++ +  C  D+                          P
Sbjct: 3   PSFDCAVSSLLCAEDNISIFDDDNNKDYCYGDVVDEFEGSWHHGNHRINHQDRGFDVSLP 62

Query: 37  AFIEESIASFIEDERNFVPGFDYLSRFQSRSLDASAREESVAWILKVQAYYSFQPLTAYL 96
              EE +   +E E   +P  DYL R +   LD  AR+E++ WI KV A++ F PL+AYL
Sbjct: 63  MLSEECLRLMVEKECQHLPNADYLKRLRRGELDLGARKEAIDWIGKVHAHFGFGPLSAYL 122

Query: 97  SVNYLDRFLYSRPLP 111
           S+NYLDRFL +  LP
Sbjct: 123 SINYLDRFLSAYELP 137


>27749.m000345 cyclin d, putative
          Length = 366

 Score = 71.6 bits (174), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 33/72 (45%), Positives = 45/72 (62%)

Query: 40  EESIASFIEDERNFVPGFDYLSRFQSRSLDASAREESVAWILKVQAYYSFQPLTAYLSVN 99
           E+ +   +E E   +P  DYL R +S  LD  +R +++ WI KVQA+YSF  L+  LS+N
Sbjct: 65  EDRVKEMVEREMKHLPRDDYLKRLRSGDLDMGSRRQAIDWIWKVQAHYSFSALSVCLSMN 124

Query: 100 YLDRFLYSRPLP 111
           YLDRFL    LP
Sbjct: 125 YLDRFLSVYQLP 136


>29661.m000935 cyclin d, putative
          Length = 306

 Score = 61.2 bits (147), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 28/42 (66%), Positives = 32/42 (76%)

Query: 70  ASAREESVAWILKVQAYYSFQPLTAYLSVNYLDRFLYSRPLP 111
            +AR ++V WILKV AYY F+P TAYLSVNYLDRFL    LP
Sbjct: 75  VTARRDAVNWILKVHAYYQFRPETAYLSVNYLDRFLSFHSLP 116


>30170.m013822 cyclin d, putative
          Length = 378

 Score = 58.9 bits (141), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 41/62 (66%), Gaps = 5/62 (8%)

Query: 46  FIEDERNFVPGFDYLSRFQSRSLDASAREESVAWILKVQAYYSFQPLTAYLSVNYLDRFL 105
           F ++E+N         + ++ S    +R E+V W+LKV A+YSF PLTA L+VNYLDRFL
Sbjct: 87  FTKEEQN-----QLYKKLETNSSLTESRREAVEWMLKVNAHYSFTPLTAVLAVNYLDRFL 141

Query: 106 YS 107
           +S
Sbjct: 142 FS 143


>29801.m003121 cyclin d, putative
          Length = 395

 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 21/38 (55%), Positives = 29/38 (76%)

Query: 70  ASAREESVAWILKVQAYYSFQPLTAYLSVNYLDRFLYS 107
           ++A +E+V W+ KV A+Y F  LTA L+VNY DRFL+S
Sbjct: 117 STAHQEAVEWMFKVNAHYGFSALTAILAVNYFDRFLFS 154


>29970.m000980 cyclin d, putative
          Length = 276

 Score = 50.4 bits (119), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 20/40 (50%), Positives = 30/40 (75%)

Query: 72  AREESVAWILKVQAYYSFQPLTAYLSVNYLDRFLYSRPLP 111
           AR+E+V W+++V+A+Y F  LT+ L+VNY DRF+ S   P
Sbjct: 3   ARKEAVDWVMRVKAHYGFTALTSVLAVNYFDRFVLSLKFP 42


>29933.m001448 cyclin d, putative
          Length = 305

 Score = 45.8 bits (107), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 50/90 (55%), Gaps = 4/90 (4%)

Query: 22  FSAESPECSSDLESPAFIEESIASFIEDERNFVPGFDYLSRFQSRSLDASAREESVAWIL 81
           F  E+P  SS+      I +  AS    E + +P  D+L   ++    +S R+E+++ IL
Sbjct: 3   FDLENPLTSSNEHQSDTIPDLFAS----ESDHMPSRDFLKCLKTCDFYSSFRQEAISLIL 58

Query: 82  KVQAYYSFQPLTAYLSVNYLDRFLYSRPLP 111
           + Q   +F+P  AYL++NY+DR +  + +P
Sbjct: 59  QAQYTCNFEPFFAYLAINYMDRCVSRQEIP 88