Jatropha Genome Database

JcCB0174221.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0174221.20 - phase: 0 /partial
         (77 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29727.m000490 conserved hypothetical protein                           76   4e-15

>29727.m000490 conserved hypothetical protein
          Length = 1088

 Score = 75.9 bits (185), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 39/61 (63%), Positives = 42/61 (68%)

Query: 16   QVSVSLMESGNPPEKHDELIELVACPDTGXXXXXXXXXXXXXXXXEREYSICKMELEEGL 75
            QVSVSLMESGNPPE HD+LIELVACP+TG                EREYS+ KMELEE L
Sbjct: 1027 QVSVSLMESGNPPENHDDLIELVACPETGFLHLFSQQQLQEFLLFEREYSVVKMELEEEL 1086

Query: 76   S 76
            S
Sbjct: 1087 S 1087