Jatropha Genome Database

JcCB0174221.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0174221.10 - phase: 0 
         (70 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29727.m000488 DNA binding protein, putative                            87   2e-18

>29727.m000488 DNA binding protein, putative
          Length = 1374

 Score = 86.7 bits (213), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 42/54 (77%), Positives = 47/54 (87%)

Query: 1  MGVSFKISKTGTRFRAKPVIPPEPALDEVSGNSKESSVIGSKNESSSRKLQVII 54
          MGVSFK+SKTGTRFR KP+  PEPALDE S N+KESS+IGSKNESS RKL+V I
Sbjct: 1  MGVSFKVSKTGTRFRPKPITLPEPALDEASENTKESSLIGSKNESSKRKLEVDI 54