Jatropha Genome Database

JcCB0174101.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0174101.10 - phase: 0 
         (131 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

28725.m000310 RNA splicing protein mrs2, mitochondrial, putative      117   1e-27
30131.m006875 RNA splicing protein mrs2, mitochondrial, putative       60   2e-10
30174.m009101 RNA splicing protein mrs2, mitochondrial, putative       60   3e-10
29883.m002003 RNA splicing protein mrs2, mitochondrial, putative       55   9e-09
30099.m001730 RNA splicing protein mrs2, mitochondrial, putative       54   2e-08
30099.m001729 RNA splicing protein mrs2, mitochondrial, putative       54   2e-08
29844.m003172 RNA splicing protein mrs2, mitochondrial, putative       52   8e-08

>28725.m000310 RNA splicing protein mrs2, mitochondrial, putative
          Length = 453

 Score =  117 bits (294), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 65/124 (52%), Positives = 78/124 (62%), Gaps = 4/124 (3%)

Query: 1   MGRGSCIFSKTNKRRLKKKSGXXXXXXXXXXXXXXXXXXXXXXQQLIDGSGNTNNNSLIX 60
           MGRGS  FSK+ +RRLKKKSG                      QQL++ + N N+++LI 
Sbjct: 1   MGRGSFFFSKSTRRRLKKKSGPPSPPTPAPPPPPPFGAASPPQQQLVEAN-NINSSNLIV 59

Query: 61  XXXXXXXXXXXXXXRLWMRFDKFGNSELMECDKSTIIKRVAIPARDLRILGPVFSHSSNI 120
                         RLWMRFD+ GNSELMECDKS IIKRV+IPARDLRILGP+FSHSSNI
Sbjct: 60  GKVVKKKAGGA---RLWMRFDRLGNSELMECDKSVIIKRVSIPARDLRILGPLFSHSSNI 116

Query: 121 LGKD 124
           L ++
Sbjct: 117 LARE 120


>30131.m006875 RNA splicing protein mrs2, mitochondrial, putative
          Length = 447

 Score = 60.1 bits (144), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 25/50 (50%), Positives = 38/50 (76%)

Query: 75  RLWMRFDKFGNSELMECDKSTIIKRVAIPARDLRILGPVFSHSSNILGKD 124
           R W+R D  GNS+++E DK T+++R  +PARDLR+L P+F + S ILG++
Sbjct: 50  RSWIRVDLSGNSQVIEVDKFTMMRRCDLPARDLRLLDPLFVYPSTILGRE 99


>30174.m009101 RNA splicing protein mrs2, mitochondrial, putative
          Length = 460

 Score = 59.7 bits (143), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 23/50 (46%), Positives = 39/50 (78%)

Query: 75  RLWMRFDKFGNSELMECDKSTIIKRVAIPARDLRILGPVFSHSSNILGKD 124
           R W++ D+ G+ E++E DK+TI++  ++PARDLR+L P+F + S ILG++
Sbjct: 50  RSWIKIDQNGDLEILELDKATIMRHCSLPARDLRLLDPLFIYPSTILGRE 99


>29883.m002003 RNA splicing protein mrs2, mitochondrial, putative
          Length = 392

 Score = 55.1 bits (131), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 35/53 (66%)

Query: 75  RLWMRFDKFGNSELMECDKSTIIKRVAIPARDLRILGPVFSHSSNILGKDHLF 127
           R W+  D  G S +++ DK  I++RV I ARDLRIL P+ S+ S ILG++ + 
Sbjct: 24  RSWILLDSNGQSSILDVDKYAIMRRVQIHARDLRILDPLLSYPSTILGRERVI 76


>30099.m001730 RNA splicing protein mrs2, mitochondrial, putative
          Length = 451

 Score = 54.3 bits (129), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/50 (42%), Positives = 33/50 (66%)

Query: 75  RLWMRFDKFGNSELMECDKSTIIKRVAIPARDLRILGPVFSHSSNILGKD 124
           R W+  D  G ++++E  K  I++R  +PARDLRIL P  S+ S +LG++
Sbjct: 42  RAWLLLDSRGQTQIIEAGKHAIMRRTGLPARDLRILDPQLSYPSTVLGRE 91


>30099.m001729 RNA splicing protein mrs2, mitochondrial, putative
          Length = 456

 Score = 54.3 bits (129), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/50 (42%), Positives = 33/50 (66%)

Query: 75  RLWMRFDKFGNSELMECDKSTIIKRVAIPARDLRILGPVFSHSSNILGKD 124
           R W+  D  G ++++E  K  I++R  +PARDLRIL P  S+ S +LG++
Sbjct: 42  RAWLLLDSTGQTQIVEAGKHAIMRRTGLPARDLRILDPQLSYPSTVLGRE 91


>29844.m003172 RNA splicing protein mrs2, mitochondrial, putative
          Length = 398

 Score = 52.0 bits (123), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 23/50 (46%), Positives = 32/50 (64%)

Query: 75  RLWMRFDKFGNSELMECDKSTIIKRVAIPARDLRILGPVFSHSSNILGKD 124
           R W+  D  G   +++ DK  I+ RV I ARDLRIL P+ S+ S ILG++
Sbjct: 31  RSWILVDASGQGTILDADKHAIMHRVQIHARDLRILDPLLSYPSTILGRE 80