Jatropha Genome Database

JcCB0174071.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0174071.10 - phase: 0 /pseudo
         (158 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29794.m003436 catalytic, putative                                     225   6e-60

>29794.m003436 catalytic, putative
          Length = 983

 Score =  225 bits (574), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 109/136 (80%), Positives = 114/136 (83%)

Query: 3   VAIRVXXXXXXXXXXXXXXXXXYEDQVGLMDWHQQYIGKVKDAVFHTQKTGRKRVVVSTE 62
           +AIRV                 YEDQVGLMDWHQ+YIGKVKDAVFHTQKTGRKRV+VSTE
Sbjct: 1   MAIRVFLFSLLLLSTAIPTFSLYEDQVGLMDWHQRYIGKVKDAVFHTQKTGRKRVIVSTE 60

Query: 63  ENVIASLDLRHGEIFWRHVLGTDDVIDGIDIALGKYVITLSSEGSILRAWNLPDGQMVWE 122
           ENVIASLDLRHGEIFWRHV GT+D IDGIDIA+GKYVITLSSEG ILRAWNLPDGQMVWE
Sbjct: 61  ENVIASLDLRHGEIFWRHVFGTNDAIDGIDIAMGKYVITLSSEGGILRAWNLPDGQMVWE 120

Query: 123 SFLQGPNHSKSLLLVP 138
           SFLQG N SKSLLLVP
Sbjct: 121 SFLQGLNPSKSLLLVP 136