Jatropha Genome Database

JcCB0173711.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0173711.10 + phase: 2 /partial
         (174 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29999.m000206 arginine biosynthesis protein argJ 1, putative          245   8e-66

>29999.m000206 arginine biosynthesis protein argJ 1, putative
          Length = 469

 Score =  245 bits (625), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 116/154 (75%), Positives = 121/154 (78%)

Query: 21  QLQACLDAVMQALAKSVAWDGEGATCLIEVTVTGAESEVKAAKIXXXXXXXXXXXXXXYG 80
           QLQACLDAVMQ LAKS+AWDGEGATCLIEVTV G ESEVKAAKI              YG
Sbjct: 316 QLQACLDAVMQGLAKSIAWDGEGATCLIEVTVAGTESEVKAAKIARSVASSSLVKAAVYG 375

Query: 81  RDPNWGRXXXXXXXXXXPFHQNNLRVMLGDILLMDNGQPLAFDRAAASNYLRKAGETHGT 140
           RDPNWGR          PFHQN LR++LGDILLMDNGQPLAFDR AAS YL+ AGETHGT
Sbjct: 376 RDPNWGRIAAAAGYAGIPFHQNKLRILLGDILLMDNGQPLAFDRPAASKYLKMAGETHGT 435

Query: 141 VGIYISVGDGSGHGQAWGCDLSYDYVKINAEYTT 174
           V IYISVGDGSG G+AWGCDLSYDYVKINAEYTT
Sbjct: 436 VKIYISVGDGSGIGKAWGCDLSYDYVKINAEYTT 469