Jatropha Genome Database

JcCB0173481.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0173481.10 - phase: 1 /partial
         (161 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29839.m000431 diphosphomevalonate decarboxylase, putative             244   1e-65

>29839.m000431 diphosphomevalonate decarboxylase, putative
          Length = 415

 Score =  244 bits (623), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 116/135 (85%), Positives = 125/135 (92%)

Query: 3   FCEWNMGKVEDGSDSRAVQVVDDKHWDDLVIIIAVVSSRQKETSSTTGMRETVETSLLLQ 62
           F +W MGKV+DGSDS AVQ+VD+KHWDDLVIIIAVVSSRQKETSST+GMRE+VETSLLLQ
Sbjct: 171 FVKWIMGKVDDGSDSLAVQLVDEKHWDDLVIIIAVVSSRQKETSSTSGMRESVETSLLLQ 230

Query: 63  HRAKEVVPKRIIKMEEAIKNRDFASFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIIS 122
           HRAKEVVPKRII+MEEAI  RDFASFAQ+TCADSNQFHAVCLDT PPIFYMNDTSHRIIS
Sbjct: 231 HRAKEVVPKRIIQMEEAINKRDFASFAQITCADSNQFHAVCLDTCPPIFYMNDTSHRIIS 290

Query: 123 CIEKWNCCEGTPQVG 137
           C+EKWN  E TPQV 
Sbjct: 291 CVEKWNRSEETPQVA 305