Jatropha Genome Database

JcCB0172651.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0172651.10 + phase: 2 /partial
         (172 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29656.m000473 cell cycle checkpoint protein rad17, putative           209   5e-55

>29656.m000473 cell cycle checkpoint protein rad17, putative
          Length = 439

 Score =  209 bits (532), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 106/174 (60%), Positives = 120/174 (68%), Gaps = 3/174 (1%)

Query: 1   RPIADFLHENVLDFISDEAMDAAKDVAXXXXXXXXXXXXFRGILARYNEXXXXXXXXXXX 60
           RPIADFLHENVLDFISD+AMDA  +VA            FRG+L R NE           
Sbjct: 267 RPIADFLHENVLDFISDDAMDATGNVASYLSDADLLLSSFRGMLVRCNEAESVLQSAAAS 326

Query: 61  XXXRGVLFGNSHPSPSRWHAIRRPKLWQVEQSLLLNQKETISQRLTVYGGSSFSNMSDVA 120
              RGVLFGNSHPSPSRWHAIRRPKLWQ  QS+L NQK  +SQRL   GGSSFSN++++ 
Sbjct: 327 VAVRGVLFGNSHPSPSRWHAIRRPKLWQAGQSMLRNQKAMLSQRLIANGGSSFSNVAEIV 386

Query: 121 AEYLPALKSLGDGASGFEAHKV--HHKGTWDDSSERMSLDDEEGQISDDEIEDW 172
            EY+P LK LG  A G EAH+V  HH   +DDSSERMSL+D E Q SDDEIE+W
Sbjct: 387 TEYVPVLKWLGHRAPGVEAHQVFEHHNEAYDDSSERMSLEDGE-QFSDDEIEEW 439