Jatropha Genome Database

JcCB0172401.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0172401.10 - phase: 2 /pseudo/partial
         (166 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30170.m013921 methylcobalamin:com methyltransferase, putative         164   2e-41
39173.m000011 methylcobalamin:com methyltransferase, putative          60   7e-10

>30170.m013921 methylcobalamin:com methyltransferase, putative
          Length = 126

 Score =  164 bits (414), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 79/90 (87%), Positives = 85/90 (94%)

Query: 1   AAGSPNVNIGVVGAGTASIFNEVMQSSGQVLDISFTPSKATGKVLASELPKSENKTCTVL 60
           AAG+PN+ +GVVGAGTASIFNEV Q+SGQ LDI+F PSKATGKVLASELPKSE+K CTVL
Sbjct: 33  AAGTPNIKVGVVGAGTASIFNEVKQTSGQSLDIAFVPSKATGKVLASELPKSESKRCTVL 92

Query: 61  YPASAKASNEIEEGLSNRGFEVVRLNTYTT 90
           YPASAKASNEIEEGLSNRGFEVVRLNTYTT
Sbjct: 93  YPASAKASNEIEEGLSNRGFEVVRLNTYTT 122


>39173.m000011 methylcobalamin:com methyltransferase, putative
          Length = 79

 Score = 59.7 bits (143), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 30/54 (55%), Positives = 33/54 (61%)

Query: 99  MVLKQXXXXXXXXXXXXXXXXXXXNLISESEQWNNSVACIGETTASAARRLGLK 152
           MVLK+                   N ISESEQWNNS+ACIGETTASAA+ LGLK
Sbjct: 1   MVLKEALICPVVAVASPSAVRAWVNFISESEQWNNSIACIGETTASAAKLLGLK 54