Jatropha Genome Database

JcCB0171801.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0171801.10 - phase: 0 
         (142 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29613.m000362 conserved hypothetical protein                          181   8e-47

>29613.m000362 conserved hypothetical protein
          Length = 153

 Score =  181 bits (460), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 100/153 (65%), Positives = 113/153 (73%), Gaps = 13/153 (8%)

Query: 1   MDSASTNSTTTVQHVTKKSSDELLRKFAEV-EDDNDEAXXXXXXXXXX------XXXXXQ 53
           MD+ +  S  TVQHVTKKSSDELLRKFAEV +DDND A                      
Sbjct: 1   MDTTNV-SAATVQHVTKKSSDELLRKFAEVGDDDNDTAEAKKMSKRRKRSIRKDNTAAAG 59

Query: 54  ARKEVA---CESPSHY--SNSLVEKRSLLPPVTRKSVLLRQLGIGRSQLRARDFKNKSVF 108
            R EV+   CESP+H   +++LVE+RSLLP VTRKSVLLRQLGIGRSQLRARD KNKS+ 
Sbjct: 60  GRGEVSSLSCESPAHCNTTSALVERRSLLPVVTRKSVLLRQLGIGRSQLRARDIKNKSIL 119

Query: 109 VAIEKTWRKTLEGASRVLLEKHYNRHRRLISDV 141
           VA+EKTWRKTLEGAS+VLLEKHYNRHRRLI+DV
Sbjct: 120 VALEKTWRKTLEGASKVLLEKHYNRHRRLINDV 152