Jatropha Genome Database

JcCB0171671.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0171671.10 + phase: 1 /pseudo/partial
         (220 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29844.m003306 conserved hypothetical protein                          232   1e-61
29757.m000733 conserved hypothetical protein                           70   8e-13

>29844.m003306 conserved hypothetical protein
          Length = 302

 Score =  232 bits (591), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 119/183 (65%), Positives = 140/183 (76%), Gaps = 2/183 (1%)

Query: 23  KSLKWWRRRLFSLMAVLSLTRGSAFRFVXXXXXXAAGFTAFISLPIEKALKDLLLWIKHD 82
           +  + WRR+L S MA  S+T GSA R        AA   A  +LP+EK LKD LLW++ D
Sbjct: 15  EECRPWRRKLSSTMA--SMTWGSALRITLLFLLIAAVVVACFTLPVEKILKDFLLWVEQD 72

Query: 83  LGPWGPLVLAAVYIPLTILAVPASVLTLGGGYLFGLPVGFVADSIGATIGATAAFLVGRT 142
           LGPWGPLVLA  YIPLT+LAVPASVLTLGGGYLFGLPVGFVADSIGAT+GA AAFL+GRT
Sbjct: 73  LGPWGPLVLAVAYIPLTVLAVPASVLTLGGGYLFGLPVGFVADSIGATVGAGAAFLLGRT 132

Query: 143 IGRSYVMSKLKNYPKFEAVAIAVRKSGFKIXXXXXXXXXXXFNMLNYLLSVTPVRTKDFM 202
           IGRS+V+SKLK+YP+F +VAIA+++SGFKI           FNMLNYLLSVTPV   ++M
Sbjct: 133 IGRSFVISKLKDYPQFRSVAIAIQRSGFKIVLLLRLVPLLPFNMLNYLLSVTPVPLGEYM 192

Query: 203 LAS 205
           LAS
Sbjct: 193 LAS 195


>29757.m000733 conserved hypothetical protein
          Length = 334

 Score = 70.1 bits (170), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 66/122 (54%)

Query: 84  GPWGPLVLAAVYIPLTILAVPASVLTLGGGYLFGLPVGFVADSIGATIGATAAFLVGRTI 143
           GP G  +  AVY  L ILA+PA  LT+  G LFG  +G +  SI  T+ A+ AFL+ R  
Sbjct: 147 GPAGYALFVAVYAGLEILAIPAIPLTMSAGLLFGSVIGTIIVSISGTVAASVAFLIARYF 206

Query: 144 GRSYVMSKLKNYPKFEAVAIAVRKSGFKIXXXXXXXXXXXFNMLNYLLSVTPVRTKDFML 203
            R  ++  ++   KF A+  A+ ++GF++           F++ NYL  +T V+   ++L
Sbjct: 207 ARERILKLVEGNKKFLAIDKAIGENGFRVVTLLRLSPLLPFSLGNYLYGLTSVKFVPYVL 266

Query: 204 AS 205
            S
Sbjct: 267 GS 268