Jatropha Genome Database

JcCB0171281.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0171281.10 + phase: 0 /pseudo/partial
         (110 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30170.m014289 tetracycline transporter, putative                      130   9e-32
29869.m001145 tetracycline transporter, putative                       91   1e-19
29930.m000618 Hippocampus abundant transcript 1 protein, putative      60   1e-10
29930.m000617 Hippocampus abundant transcript 1 protein, putative      55   5e-09

>30170.m014289 tetracycline transporter, putative
          Length = 442

 Score =  130 bits (328), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 64/81 (79%), Positives = 72/81 (88%), Gaps = 1/81 (1%)

Query: 30  QGKAQGCISGIGSFANVVSPLLFSPLTALFLSERAPFHFPGFSIMCAGFTSMIALIQSIM 89
           QGKAQG +SG+GS ANVVSPL+FSPLTALFLSERAPFHFPGFSIMC GF SMIALIQS+M
Sbjct: 363 QGKAQGFVSGLGSLANVVSPLVFSPLTALFLSERAPFHFPGFSIMCVGFASMIALIQSMM 422

Query: 90  MRLPPPLISNERVNNCNYVDA 110
           MR+ PP ISNER +N + V+A
Sbjct: 423 MRVAPP-ISNERASNYSNVEA 442


>29869.m001145 tetracycline transporter, putative
          Length = 410

 Score = 90.9 bits (224), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 40/49 (81%), Positives = 45/49 (91%)

Query: 30  QGKAQGCISGIGSFANVVSPLLFSPLTALFLSERAPFHFPGFSIMCAGF 78
           QGKAQGCIS I SFAN++SPL+FSPLTALFLSE APFHFPGFS++C GF
Sbjct: 288 QGKAQGCISSISSFANIISPLIFSPLTALFLSEEAPFHFPGFSMLCIGF 336


>29930.m000618 Hippocampus abundant transcript 1 protein, putative
          Length = 443

 Score = 60.5 bits (145), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 30/62 (48%), Positives = 42/62 (67%)

Query: 30  QGKAQGCISGIGSFANVVSPLLFSPLTALFLSERAPFHFPGFSIMCAGFTSMIALIQSIM 89
           QGKAQG ++G+ S A+++SPL  SPLT+ FLS  APF   GFSI+ A    M+A   + M
Sbjct: 362 QGKAQGFVAGVQSIASLLSPLAMSPLTSWFLSSNAPFDCKGFSIIVASLCMMVAFCYACM 421

Query: 90  MR 91
           ++
Sbjct: 422 LK 423


>29930.m000617 Hippocampus abundant transcript 1 protein, putative
          Length = 442

 Score = 55.5 bits (132), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 27/53 (50%), Positives = 38/53 (71%)

Query: 30  QGKAQGCISGIGSFANVVSPLLFSPLTALFLSERAPFHFPGFSIMCAGFTSMI 82
           QGKAQG ++G+ + A+++SPL  SPLT+ FLS  APF+  GFSI+ A    +I
Sbjct: 362 QGKAQGFVAGVQAIASLLSPLATSPLTSWFLSSNAPFNCKGFSIIVASLCMLI 414