Jatropha Genome Database

JcCB0170501.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0170501.10 + phase: 0 
         (116 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30074.m001337 hypothetical protein                                    125   5e-30

>30074.m001337 hypothetical protein
          Length = 293

 Score =  125 bits (314), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 69/99 (69%), Positives = 79/99 (79%)

Query: 6   SEVKKLKEDTDQMIQAKGQICSQILEKQRKIASLESDSYTLAQTLELIQQERVSLSAKLV 65
           SE K+LKED + MIQAKGQICSQILEKQRKIASLE DS TL+QTLELIQQERVSLSAKLV
Sbjct: 48  SETKRLKEDIELMIQAKGQICSQILEKQRKIASLEFDSSTLSQTLELIQQERVSLSAKLV 107

Query: 66  EKSAYYIKVANDINAKLQQQQDWINSNSINREMGEQTLV 104
            KS YY KVA+++N+KLQQQQ   N      E G ++ +
Sbjct: 108 LKSEYYAKVADELNSKLQQQQVKDNDAEQAAETGGRSPI 146