Jatropha Genome Database

JcCB0170011.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0170011.10 + phase: 0 
         (57 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29822.m003475 pectate lyase, putative                                  65   6e-12

>29822.m003475 pectate lyase, putative
          Length = 431

 Score = 65.5 bits (158), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 32/52 (61%), Positives = 40/52 (76%), Gaps = 3/52 (5%)

Query: 1  MELAKIVLIFVLFVSTIIPNLTAADDTIGVYDEVWKKRQQEAKSHLMDAYVA 52
          ME+ K+V+IFVL  ++IIP L A    IG YDEVWKKR +EAK ++MDAYVA
Sbjct: 1  MEVEKLVVIFVLAFASIIPILNA---DIGYYDEVWKKRAEEAKKNMMDAYVA 49