Jatropha Genome Database

JcCB0164571.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0164571.10 - phase: 0 /partial
         (341 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29709.m001212 nucleolar GTP-binding protein, putative                 536   e-153
30169.m006455 nucleolar GTP-binding protein, putative                 129   2e-30
29726.m004011 Spo0B-associated GTP-binding protein, putative           61   8e-10
29977.m000261 Mitochondrial GTPase, putative                           61   9e-10
30169.m006437 GTP-binding protein enga, putative                       55   7e-08

>29709.m001212 nucleolar GTP-binding protein, putative
          Length = 443

 Score =  536 bits (1381), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 257/309 (83%), Positives = 283/309 (91%)

Query: 33  FQQLAVPLREYLDNFPKRKYLHPYERSLIELTLGEGNYEEVLRNVDALRKKVVSVGKEHA 92
            ++LA+PLREYL+NFPKRKYLHPYE+SLIELTLG+GNYEEVLR VDALRKKVVS+GKEHA
Sbjct: 135 MKELALPLREYLENFPKRKYLHPYEQSLIELTLGDGNYEEVLRKVDALRKKVVSIGKEHA 194

Query: 93  SVCAKSSTKREAEERLNEGLEKLQEIFKREGKAVDELLNIAKTLRAMPVVDLETPTLCLV 152
           SVCAKS TKREAEE+LNEG EKL+EIFK EGKAVD+LLNIAKTLRAMPVV+LETPTLCLV
Sbjct: 195 SVCAKSLTKREAEEQLNEGREKLEEIFKCEGKAVDDLLNIAKTLRAMPVVNLETPTLCLV 254

Query: 153 GAPNVGKSSLVRILSTGKPEVCNYPFTTRGILMGHISFDFKYFQVTDTPGLLKRCDEERN 212
           GAPNVGKSSLVRILSTGKPEVCNYPFTTRGILMGHI+FDF++FQVTDTPGLLKRCDE+RN
Sbjct: 255 GAPNVGKSSLVRILSTGKPEVCNYPFTTRGILMGHIAFDFQHFQVTDTPGLLKRCDEDRN 314

Query: 213 NLEKLTLAVLRHLPTAILYVHDLTGECGTPVSDQFEIYKEIKERFSNHLWLDVVSKCDLL 272
           NLEKLTLAVL HLPTAILYVHDLTGECGT  SDQF IYKEIKERFS+HLWLDVVSKCDLL
Sbjct: 315 NLEKLTLAVLTHLPTAILYVHDLTGECGTSASDQFVIYKEIKERFSDHLWLDVVSKCDLL 374

Query: 273 QELPVIFIAEDSNGGHFEMARYSKIGPSGAIHVSAKSREGLDELKAKVHDLLVAQMERIR 332
           QE  +IF A+D+N  HFEM RY K+GP+GAI VS KS EGL+ELK +V +LLV QMERI+
Sbjct: 375 QESSMIFNAKDNNNDHFEMVRYHKVGPNGAIRVSIKSGEGLNELKGRVQNLLVGQMERIK 434

Query: 333 GMQMKEANP 341
            M  K+ NP
Sbjct: 435 SMASKDDNP 443


>30169.m006455 nucleolar GTP-binding protein, putative
          Length = 678

 Score =  129 bits (324), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 68/241 (28%), Positives = 123/241 (51%)

Query: 31  FTFQQLAVPLREYLDNFPKRKYLHPYERSLIELTLGEGNYEEVLRNVDALRKKVVSVGKE 90
           +T Q     L   +D FP+   +HP+   L+ +   + +Y+  L  ++  R  +  + K+
Sbjct: 53  YTQQNFHEKLSTIIDEFPRLDDIHPFYGDLLHVLYNKDHYKLALGQINTARNLISKIAKD 112

Query: 91  HASVCAKSSTKREAEERLNEGLEKLQEIFKREGKAVDELLNIAKTLRAMPVVDLETPTLC 150
           +  +     +    +      L ++  + KR G ++  L  I + +  +P +D  T T+ 
Sbjct: 113 YVKLLKYGDSLYRCKSLKVAALGRMCTVIKRIGPSLAYLEQIRQHMARLPSIDPNTRTIL 172

Query: 151 LVGAPNVGKSSLVRILSTGKPEVCNYPFTTRGILMGHISFDFKYFQVTDTPGLLKRCDEE 210
           + G PNVGKSS +  ++    +V  Y FTT+ + +GH  + +  +QV DTPG+L R  E+
Sbjct: 173 ICGYPNVGKSSFINKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFED 232

Query: 211 RNNLEKLTLAVLRHLPTAILYVHDLTGECGTPVSDQFEIYKEIKERFSNHLWLDVVSKCD 270
           RN +E  ++  L HL  A+L+  D++G CG  ++ Q  ++  IK  F N   + V +K D
Sbjct: 233 RNIIEMCSITALAHLRAAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTD 292

Query: 271 L 271
           L
Sbjct: 293 L 293


>29726.m004011 Spo0B-associated GTP-binding protein, putative
          Length = 637

 Score = 60.8 bits (146), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 36/95 (37%), Positives = 50/95 (52%), Gaps = 5/95 (5%)

Query: 149 LCLVGAPNVGKSSLVRILSTGKPEVCNYPFTTRGILMGHISFDF-KYFQVTDTPGLLKRC 207
           + +VGAPN GKS+L+ ++S  +P + NYPFTT    +G +SFD+     V D PGLL   
Sbjct: 342 VGIVGAPNAGKSTLLSVISAAQPAIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLL--- 398

Query: 208 DEERNNLEKLTLAVLRHLPTAILYVHDLTGECGTP 242
            E  +    L    LRH     + VH + G    P
Sbjct: 399 -EGAHRGFGLGHEFLRHTERCSVLVHVVDGSSQQP 432


>29977.m000261 Mitochondrial GTPase, putative
          Length = 417

 Score = 60.8 bits (146), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 40/87 (45%), Positives = 48/87 (55%), Gaps = 6/87 (6%)

Query: 151 LVGAPNVGKSSLVRILSTGKPEVCNYPFTTRGILMGHISFDFKYFQVTDTPGLLKRCDEE 210
           LVG PN GKS+L+  LS  KP V +Y FTT    +G + FD     V D PGL+K   E 
Sbjct: 319 LVGMPNAGKSTLLGALSRAKPRVGHYSFTTLRPNLGKLKFDDLSITVADIPGLIKGAHEN 378

Query: 211 RNNLEKLTLAVLRHLP-TAIL-YVHDL 235
           R     L  A LRH+  T +L YV DL
Sbjct: 379 RG----LGHAFLRHIERTKVLAYVVDL 401


>30169.m006437 GTP-binding protein enga, putative
          Length = 624

 Score = 54.7 bits (130), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 93/215 (43%), Gaps = 50/215 (23%)

Query: 147 PTLCLVGAPNVGKSSLV-RILSTGKPEVCNYPFTTRGILMGHISF--DFKYFQVTDTPGL 203
           P + +VG PNVGKS+L  R++   K  V + P  TR  L G  SF  DF+ F V DT G+
Sbjct: 141 PRVAIVGRPNVGKSALFNRLVGGNKAIVVDEPGVTRDRLYGR-SFWGDFE-FMVVDTGGV 198

Query: 204 LKRCDEERNNLEKLTL---------------AVLRHLPTAI------------LYVHDLT 236
           L     + N +E L +               A +  +P+ I            + +  + 
Sbjct: 199 LTISQSQDNVMEDLAITTTIGMDGIPLASREAAVARMPSMIERQAAAAVEESSVIIFLVD 258

Query: 237 GECGTPVSDQFEIYKEIKERFSNHLWLDVVSKCDLLQELPVIFIAEDSNGGHFEMARYSK 296
           G+ G   +D  EI   +++ +SN   +  V+KC            E    G  + A +  
Sbjct: 259 GQAGLIAAD-IEIADWLRKNYSNKFIILAVNKC------------ESPKKGIMQAAEFWS 305

Query: 297 IGPSGAIHVSAKSREGLDELKAKVHDLLVAQMERI 331
           +G S  I +SA S  G  EL     DL+ +Q+ ++
Sbjct: 306 LGLS-PIPISALSGTGTGEL----LDLVCSQLAKV 335