Jatropha Genome Database

JcCB0164521.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0164521.10 - phase: 0 /partial
         (141 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

27504.m000624 Disease resistance protein RPM1, putative               139   4e-34
27504.m000625 Disease resistance protein RPM1, putative                82   8e-17
29758.m000669 hypothetical protein                                     76   5e-15
30147.m013889 Disease resistance protein RPP13, putative               76   6e-15
30074.m001399 Disease resistance protein RPM1, putative                50   4e-07
29757.m000737 Disease resistance protein RPM1, putative                49   9e-07
29990.m000507 leucine-rich repeat-containing protein, putative         47   3e-06
30074.m001398 leucine-rich repeat-containing protein 2, lrrc2, p...    46   6e-06
29994.m000440 Disease resistance protein RPH8A, putative               45   9e-06

>27504.m000624 Disease resistance protein RPM1, putative
          Length = 571

 Score =  139 bits (350), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 68/140 (48%), Positives = 91/140 (65%), Gaps = 1/140 (0%)

Query: 1   MPVFIFTCKSDDADSFTEDLLTRKSQVDVDSTRAAAKDXXXXXXXXXXXXXXXXXCLTTF 60
           MP F FTC SD+ +SF  +LL +K+Q D      +  D                 CL   
Sbjct: 1   MPHFYFTCNSDNIESFVAELLRKKNQDD-GVLSISLDDGNRSSMSSIAANKDESDCLAAL 59

Query: 61  RSNYEKLPDFLKCCIDYCCICVRYHIEKGKLVRLLLAEGLITEKPGEVMEDIASNVIAEL 120
           +S+YEKLPD LKCC +YCCI +RY +EKGKL+RLLLAE LI EK G +MEDIA+++I EL
Sbjct: 60  KSDYEKLPDRLKCCFEYCCISIRYSMEKGKLIRLLLAERLIQEKNGSIMEDIAASIITEL 119

Query: 121 IDLGMLRQVLDGFGDVIEVP 140
           I +GML++  DG G++++VP
Sbjct: 120 IGIGMLQEEQDGSGNILQVP 139


>27504.m000625 Disease resistance protein RPM1, putative
          Length = 546

 Score = 82.0 bits (201), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 51/130 (39%), Positives = 69/130 (53%), Gaps = 4/130 (3%)

Query: 1   MPVFIFTCKSDDADSFTEDLLTR-KSQVDVDSTRAAAKDXXXXXXXXXXXXXXXXXCLTT 59
           MP+F F  +S++   F    + R KSQ DV S+    ++                     
Sbjct: 1   MPLFYFVRESENRREFYFVEMPRAKSQGDVASSSNHIEEGESSSNSKGSKGKTSSS--EY 58

Query: 60  FRSNYEKLPDFLKCCIDYC-CICVRYHIEKGKLVRLLLAEGLITEKPGEVMEDIASNVIA 118
           F SNYE LPD LK C+DYC  I  RY ++K KL RLLLA   + EK GE+MED+  N+I 
Sbjct: 59  FMSNYENLPDHLKSCLDYCFIITFRYGVDKEKLPRLLLAAYTVPEKSGEIMEDVIENIIE 118

Query: 119 ELIDLGMLRQ 128
           E + L ML++
Sbjct: 119 EFVRLQMLQE 128


>29758.m000669 hypothetical protein
          Length = 356

 Score = 76.3 bits (186), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 52/148 (35%), Positives = 76/148 (51%), Gaps = 28/148 (18%)

Query: 1   MPVFIFTCKSDDA-DSFTEDLLTRKSQ----VDVDSTRAAAKDXXXXXXXXXXXXXXXXX 55
           MP F F  +SDD  + F  ++  RKSQ    + + S+R A                    
Sbjct: 1   MPYFYFRHESDDGKEMFFAEMPVRKSQDNDVLPMISSRTAPSKGE--------------- 45

Query: 56  CLTTFRSNYEKLPDFLKCCIDYCC----ICVRYHIEKGKLVRLLLAEGLITEKPGEVMED 111
              ++ +NYE LP  LK C+DY      I    ++ + KLVRLL+AEGLI  + GE++E 
Sbjct: 46  --DSYLANYENLPHHLKSCLDYIASLAFIATLTYLTENKLVRLLVAEGLIPAETGEILEV 103

Query: 112 IASNVIAELIDLGMLRQVLDGFGDVIEV 139
           +A N+I ELI L ML++    +  V+EV
Sbjct: 104 VAENIIGELIGLEMLQEC--PYWHVLEV 129


>30147.m013889 Disease resistance protein RPP13, putative
          Length = 685

 Score = 75.9 bits (185), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 35/69 (50%), Positives = 49/69 (71%), Gaps = 1/69 (1%)

Query: 60  FRSNYEKLPDFLKCCIDYCCICVR-YHIEKGKLVRLLLAEGLITEKPGEVMEDIASNVIA 118
           F+  Y+ LP +L+ C+ YCCI    Y I KGKL+RLL+AEGL  EK G+++ED+A   I 
Sbjct: 182 FKLKYDSLPYYLQSCLMYCCIFPENYWINKGKLIRLLVAEGLTQEKTGQLLEDVAEGNIN 241

Query: 119 ELIDLGMLR 127
           EL++ GML+
Sbjct: 242 ELVNQGMLK 250


>30074.m001399 Disease resistance protein RPM1, putative
          Length = 943

 Score = 49.7 bits (117), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/68 (39%), Positives = 41/68 (60%), Gaps = 1/68 (1%)

Query: 63  NYEKLPDFLKCCIDYCCIC-VRYHIEKGKLVRLLLAEGLITEKPGEVMEDIASNVIAELI 121
           +Y  LP +LK C+ Y  I  V   IE+ KLVRL +AEG + EK G  +E++A   + EL+
Sbjct: 410 SYNDLPYYLKYCLMYFSIFPVGDLIERAKLVRLWIAEGFVKEKEGMTLEEVAEGYLNELV 469

Query: 122 DLGMLRQV 129
              +++ V
Sbjct: 470 KRSLVQVV 477


>29757.m000737 Disease resistance protein RPM1, putative
          Length = 937

 Score = 48.9 bits (115), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 1/68 (1%)

Query: 63  NYEKLPDFLKCCIDYCCICVR-YHIEKGKLVRLLLAEGLITEKPGEVMEDIASNVIAELI 121
           +Y  LP  LK C  YCC+    Y I++ +L+RL +AEG + +  G   E++A   + ELI
Sbjct: 434 SYNDLPYRLKHCFLYCCLFPEDYPIKRKRLIRLWMAEGFVEKIKGITPEEVAEKYLLELI 493

Query: 122 DLGMLRQV 129
              ML+ V
Sbjct: 494 RRSMLQPV 501


>29990.m000507 leucine-rich repeat-containing protein, putative
          Length = 1535

 Score = 46.6 bits (109), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 1/67 (1%)

Query: 63  NYEKLPDFLKCCIDYCCIC-VRYHIEKGKLVRLLLAEGLITEKPGEVMEDIASNVIAELI 121
           +Y  LP+ LK C  YC +  + Y  EK KL+R+ +AEG + +  G+  ED   N   +L+
Sbjct: 430 SYSHLPENLKRCFSYCSLFPMDYEFEKEKLIRMWVAEGFLQQAKGKTEEDAGDNYFLDLL 489

Query: 122 DLGMLRQ 128
            +   ++
Sbjct: 490 RMSFFQR 496


>30074.m001398 leucine-rich repeat-containing protein 2, lrrc2,
           putative
          Length = 943

 Score = 46.2 bits (108), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 1/68 (1%)

Query: 63  NYEKLPDFLKCCIDYCCIC-VRYHIEKGKLVRLLLAEGLITEKPGEVMEDIASNVIAELI 121
           +Y  LP +LK C+ Y  I  V   IE  +LVRL +AEG + +K G  +E++A   + ELI
Sbjct: 410 SYNDLPYYLKHCLMYFSIFPVGDSIEHTRLVRLWIAEGFVKKKEGMTLEEVAEGYLNELI 469

Query: 122 DLGMLRQV 129
              +++ V
Sbjct: 470 KRSLVQVV 477


>29994.m000440 Disease resistance protein RPH8A, putative
          Length = 835

 Score = 45.4 bits (106), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 63  NYEKLPDFLKCCIDYCCICVR-YHIEKGKLVRLLLAEGLITEKPGEVMEDIASNVIAELI 121
           +Y+ LP  LK C+ Y  I    Y I++ KL+RL ++EGL+ E  G+ +E++  + + ELI
Sbjct: 416 SYDDLPYSLKYCLLYFSIFPEEYSIKRRKLIRLWISEGLVKEVMGKTLEEVGEDYLKELI 475

Query: 122 DLGML 126
              ++
Sbjct: 476 QRSLI 480