Jatropha Genome Database

JcCB0163231.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0163231.10 - phase: 0 /partial
         (304 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30131.m007230 conserved hypothetical protein                          375   e-104

>30131.m007230 conserved hypothetical protein
          Length = 452

 Score =  375 bits (964), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 204/307 (66%), Positives = 234/307 (76%), Gaps = 15/307 (4%)

Query: 1   MASLHQIQHSWLSSVTQKP---ALFPSKTSPFKISFSLNPSNTEPTPQNPPEFEPEPGPA 57
           M+SLH +Q S+   + QKP   +L PSKTS FK+SFSLNPSN E + QNPPE  PEP P 
Sbjct: 1   MSSLH-LQPSFFPFI-QKPTTTSLLPSKTSFFKVSFSLNPSNAESS-QNPPESTPEPDP- 56

Query: 58  HPVKLAFEKAKAYKKSTGDSKKTKLGQNLXXXXXXXXXXXXXXDEEVPASVKVAMENAKE 117
            PVKLAFEKAKAYKK+  ++KK KL QN               D+EVP SVKVAME A+E
Sbjct: 57  DPVKLAFEKAKAYKKTIEETKKAKLEQN----PVEGSAGNNGKDKEVPVSVKVAMEKARE 112

Query: 118 YKKNKGVAGGGDVKGSARSETNSGLKGGNRENLVSGLVESSASNKEKLSISSMDFMGLNF 177
           YKKN+ V      KG+  SE +SGLK  +  NL  G +E +A+ K+KLSISS+DFMGLNF
Sbjct: 113 YKKNQVVG----TKGATESEMSSGLKARSEGNLQRGSIEKTATKKDKLSISSIDFMGLNF 168

Query: 178 ADKKRGKGLPPGLTPVTDSFPGGDLPEVEIIVGDTSKFGDPTTSMPKPSQENDSEFYKPK 237
           ADKK G+GLP GL PV D FP G+LPEVEIIVGDT  F DPTTSMPKPSQ+  S+ YKPK
Sbjct: 169 ADKKTGRGLPAGLAPVIDPFPEGNLPEVEIIVGDTDNFDDPTTSMPKPSQDESSDVYKPK 228

Query: 238 VSTWGVFPRPGNISKTFGGGRTIRPGDVLETAEERTAKDERTKQLLAAYRKKVGLNVDPK 297
           VSTWGVFPRPGNISKTFGGGRTIRPGDVLETAEER AKD+RTKQLLAAYRKK+GL++DPK
Sbjct: 229 VSTWGVFPRPGNISKTFGGGRTIRPGDVLETAEERAAKDDRTKQLLAAYRKKMGLSIDPK 288

Query: 298 LKLECEK 304
           +K ECEK
Sbjct: 289 IKFECEK 295