Jatropha Genome Database

JcCB0162471.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0162471.10 + phase: 1 /pseudo/partial
         (125 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

28693.m000104 Aspartic proteinase nepenthesin-1 precursor, putative   112   5e-26
28693.m000106 Aspartic proteinase nepenthesin-2 precursor, putative    56   4e-09

>28693.m000104 Aspartic proteinase nepenthesin-1 precursor, putative
          Length = 533

 Score =  112 bits (280), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 57/121 (47%), Positives = 76/121 (62%), Gaps = 5/121 (4%)

Query: 10  LILGGMLTYIVXVLSKVEMXISSD--MTGYLIVFNRERNVLGWKPSNCYDALNTNTFPIN 67
           ++ GG   Y + ++   ++ I     MTGY IVFNRERNVLGWK S+CYD ++T TFP++
Sbjct: 413 ILQGGASIYCLAIVKSGDVNIIGQNFMTGYRIVFNRERNVLGWKASDCYDDMDTTTFPVD 472

Query: 68  PLSPAVPPATAVNPEXXXXXXXXXXXXXXXXPPANHSPRLKR---FTFTIIMVLIPFFII 124
           P+SP +PPATAVNP+                P  N++P+L +    TF IIMVLIPFF I
Sbjct: 473 PISPGIPPATAVNPQATAGSGNTTEVSGTPPPVGNNAPKLPKLNSLTFAIIMVLIPFFTI 532

Query: 125 V 125
           V
Sbjct: 533 V 533


>28693.m000106 Aspartic proteinase nepenthesin-2 precursor, putative
          Length = 518

 Score = 56.2 bits (134), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 25/45 (55%), Positives = 32/45 (71%), Gaps = 1/45 (2%)

Query: 34  MTGYLIVFNRERNVLGWKPSNCYDALNTNTFPINPLSPAVPPATA 78
           MTGY +VF+RE+ VLGWK ++CYD    N+FP  P +  VPPA A
Sbjct: 424 MTGYRVVFDREKLVLGWKETDCYDQ-EYNSFPTEPHASDVPPAVA 467