Jatropha Genome Database

JcCB0161221.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0161221.20 + phase: 0 
         (122 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29762.m000497 conserved hypothetical protein                           78   1e-15

>29762.m000497 conserved hypothetical protein
          Length = 120

 Score = 77.8 bits (190), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/116 (43%), Positives = 62/116 (53%), Gaps = 9/116 (7%)

Query: 6   FLFCNLSRPSILVRPWTPYFLYNPIKRNKGSSAEKENEGLAIDQERASSTADEFXXXXXX 65
           FL C L+R S+ VRP TP  L NP+ +        EN+G    +E+A S ADEF      
Sbjct: 5   FLLCKLTR-SLTVRPSTP-LLCNPMMKR---YTHAENQGHRGVEEKAPSLADEFRRVAEE 59

Query: 66  XXXXXXXXXXXXDQGITSQTGEKTIDGAEEAS----GDSNIESVKNRYKKHELGAN 117
                       DQGI SQT +KT DGAEEA+    G  + E+VK RYK HE GA+
Sbjct: 60  KAKAEEKTEQVADQGIASQTSDKTSDGAEEAATVGRGGGDTEAVKGRYKGHEPGAD 115