Jatropha Genome Database

JcCB0161221.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0161221.10 - phase: 0 
         (132 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29762.m000496 ubiquitin-activating enzyme E1, putative                178   5e-46

>29762.m000496 ubiquitin-activating enzyme E1, putative
          Length = 467

 Score =  178 bits (452), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 90/119 (75%), Positives = 101/119 (84%)

Query: 1   MKSNGTDAAQILGEIETLKATKSDIENRIAALEAKLRHLNLPNDNVSSNGSSLPVSIVDY 60
           M+SNG+++  IL EIETLK  KS+I+NRIAALEA+LR +NL ND  SSNGS   +S  D 
Sbjct: 1   MESNGSESTGILREIETLKTEKSNIDNRIAALEAQLRQINLQNDTASSNGSCPLISTNDS 60

Query: 61  GFGHGLSSDMIYRYSRHLLLPSFGVQGQSNLLKSSILVVGAGGLGSPALLYLAACGVGK 119
           G  H LSSDMIYRYSRHLLLPSFG+QGQSNLLKSSILVVGAGGLGSPALLYLAACGVG+
Sbjct: 61  GLSHALSSDMIYRYSRHLLLPSFGIQGQSNLLKSSILVVGAGGLGSPALLYLAACGVGR 119