Jatropha Genome Database

JcCB0159721.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0159721.10 + phase: 0 
         (242 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29333.m001086 Carotenoid isomerase, chloroplast precursor, putative   281   2e-76

>29333.m001086 Carotenoid isomerase, chloroplast precursor, putative
          Length = 617

 Score =  281 bits (718), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 155/234 (66%), Positives = 174/234 (74%), Gaps = 28/234 (11%)

Query: 1   MSLGSNTTLQLSGFRPGIA-------ETRKLSR--NPSRI---WSFNGKKKHGKVKSESF 48
           MSL  ++T+Q   F P          ET K+S   N S I   W  N   ++ + +S SF
Sbjct: 1   MSLAFSSTVQFGSFGPRSQKHGFFSFETSKVSYLFNLSNINSGWLCNSTSRNLEYRSASF 60

Query: 49  QLNKDFLS------------RALSVDKEVDIEGINGGVTKERHYDAIVIGSGIGGLVAAT 96
             N  F S              LSV+K+VDI+G N GV+K   +DAIVIGSGIGGLVAAT
Sbjct: 61  NSNNKFRSCKVKRNLALRTKSVLSVNKKVDIQG-NRGVSK---FDAIVIGSGIGGLVAAT 116

Query: 97  QLAVKGARVLVLEKYTIPGGSSGYYQRDGYTFDVGSSVMFGFSDKGNLNLITQALAAVGC 156
           QLAVKGARVLVLEKY IPGGSSGYY+RDGYTFDVGSSVMFGFSDKGNLNLITQALAAVG 
Sbjct: 117 QLAVKGARVLVLEKYVIPGGSSGYYERDGYTFDVGSSVMFGFSDKGNLNLITQALAAVGR 176

Query: 157 KMEVIPDPTTVHFHLPNNLSVRVHREYSDFISELTTKFPHEKEGILKFYGECWK 210
           KMEVIPDP+TVHFHLPNNLSVRVHREYSDF+SEL T+FPHE++GILKFYGECWK
Sbjct: 177 KMEVIPDPSTVHFHLPNNLSVRVHREYSDFVSELITRFPHEEQGILKFYGECWK 230