Jatropha Genome Database

JcCB0158591.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0158591.10 + phase: 2 /partial
         (82 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30138.m003942 LIGULELESS1 protein, putative                           139   3e-34
30174.m009082 LIGULELESS1 protein, putative                            58   8e-10

>30138.m003942 LIGULELESS1 protein, putative
          Length = 557

 Score =  139 bits (350), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 65/79 (82%), Positives = 71/79 (89%)

Query: 3   EGSHLGSILIPDGSDAINFDVTDGIYQGSDFMNAKGSLSCEDGTTVDLLQLSSQLQRVEH 62
           EGS LGSIL+ DGSDAINF + DG+YQGS+FMNAK  LSCEDGTT+DLLQLSSQL+RVE 
Sbjct: 478 EGSRLGSILLSDGSDAINFVIADGMYQGSNFMNAKDCLSCEDGTTIDLLQLSSQLERVER 537

Query: 63  QKQSMQVKQENDALCWPHI 81
           QKQSMQVKQENDA CWPHI
Sbjct: 538 QKQSMQVKQENDAFCWPHI 556


>30174.m009082 LIGULELESS1 protein, putative
          Length = 512

 Score = 58.2 bits (139), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 29/44 (65%), Positives = 34/44 (77%)

Query: 29  QGSDFMNAKGSLSCEDGTTVDLLQLSSQLQRVEHQKQSMQVKQE 72
           QG DF++ K  +S E+GTTVDLLQLSS L RVE Q+ SMQVK E
Sbjct: 456 QGPDFVSDKFCISAENGTTVDLLQLSSHLHRVEQQRNSMQVKHE 499