Jatropha Genome Database

JcCB0156721.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0156721.20 - phase: 0 
         (134 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30170.m014075 50S ribosomal protein L31, putative                     210   2e-55

>30170.m014075 50S ribosomal protein L31, putative
          Length = 134

 Score =  210 bits (534), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 99/124 (79%), Positives = 110/124 (88%)

Query: 1   MALSLTSSFLQIKXXXXXXXXXRKVKVNAGMNSNLQVTCRKKDIHPQFYEDAKVYCNGEL 60
           MA +LT++FLQIK         +KVK +A  N NLQVTCRKKDIHP+F+EDAKVYCNGEL
Sbjct: 1   MAHTLTNTFLQIKPLSPPLVPIKKVKASAVRNFNLQVTCRKKDIHPEFHEDAKVYCNGEL 60

Query: 61  VMTTGGTQKEYVVDVWSGNHPFYLGNRSAVVVDADQVEKFRKKFGELSQLMEIPVLKGEI 120
           VMTTGGTQKEYVVDVWSGNHPFYLGNRSAV+VDADQVEKFRKKFGELSQ+MEIPVLKGEI
Sbjct: 61  VMTTGGTQKEYVVDVWSGNHPFYLGNRSAVLVDADQVEKFRKKFGELSQIMEIPVLKGEI 120

Query: 121 VLPT 124
           +LP+
Sbjct: 121 ILPS 124