Jatropha Genome Database

JcCB0156001.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0156001.10 - phase: 2 /partial
         (252 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

28725.m000310 RNA splicing protein mrs2, mitochondrial, putative      463   e-131
29844.m003172 RNA splicing protein mrs2, mitochondrial, putative      219   1e-57
30131.m006875 RNA splicing protein mrs2, mitochondrial, putative      214   4e-56
29883.m002003 RNA splicing protein mrs2, mitochondrial, putative      207   3e-54
30099.m001730 RNA splicing protein mrs2, mitochondrial, putative      204   4e-53
30099.m001729 RNA splicing protein mrs2, mitochondrial, putative      199   2e-51
30174.m009101 RNA splicing protein mrs2, mitochondrial, putative      185   2e-47
29991.m000621 RNA splicing protein mrs2, mitochondrial, putative       50   1e-06

>28725.m000310 RNA splicing protein mrs2, mitochondrial, putative
          Length = 453

 Score =  463 bits (1192), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 223/252 (88%), Positives = 236/252 (93%)

Query: 1   ELPFEFQVLEVALEVVCTYLDSNVADLERDAYPVLDELARNVSTKNLEHVRSLKSNLTRL 60
           ELPFEFQVLE+ALEVVCTYLDSNVADLERDAYPVLDELARNVSTKNLEHVRSLKSNLTRL
Sbjct: 202 ELPFEFQVLEIALEVVCTYLDSNVADLERDAYPVLDELARNVSTKNLEHVRSLKSNLTRL 261

Query: 61  LARVQKVRDEIEHLLDDNEDMADLYLTRKWIQNQQSEALLGPAASNGILPAAPHLHRLNS 120
           LARVQKVRDEIEHLLDDNEDMADLYLTRKWIQNQQSEALLG AASN I+ A PHL RLNS
Sbjct: 262 LARVQKVRDEIEHLLDDNEDMADLYLTRKWIQNQQSEALLGAAASNSIITATPHLPRLNS 321

Query: 121 CHSASMMTGGSLDQDDVEELEMLFEAYFMQLDGTRNKILSVREYIDDTEDYVNIQLDNQR 180
             SAS++TG  LD++DVE+LEML EAYFMQLDGTRNKILSVREYIDDTEDYVNIQLDNQR
Sbjct: 322 SRSASLVTGSILDENDVEDLEMLLEAYFMQLDGTRNKILSVREYIDDTEDYVNIQLDNQR 381

Query: 181 NELIQLQLTLTIASFAIALDTLIAGFFGMNIPCRWYHMDGIFDYFVGVSSAGCFLLFLLI 240
           NELIQLQLTLTIASFAIA+DTL+A FFGMNIPCR Y MDG+F YFVG +SA CFLLF+L+
Sbjct: 382 NELIQLQLTLTIASFAIAMDTLLASFFGMNIPCRLYEMDGVFGYFVGSTSAACFLLFMLV 441

Query: 241 LGYARWKKLLGS 252
           LGYARWKKLLGS
Sbjct: 442 LGYARWKKLLGS 453


>29844.m003172 RNA splicing protein mrs2, mitochondrial, putative
          Length = 398

 Score =  219 bits (558), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 133/254 (52%), Positives = 179/254 (70%), Gaps = 7/254 (2%)

Query: 1   ELPFEFQVLEVALEVVCTYLDSNVADLERDAYPVLDELARNVSTKNLEHVRSLKSNLTRL 60
           E PFEF+ LEVALE +CT+L +   +LE  AYP LDEL   +S++NL+ VR LKS +TRL
Sbjct: 150 ESPFEFRALEVALEAICTFLAARTTELETAAYPALDELTSKISSRNLDRVRKLKSAMTRL 209

Query: 61  LARVQKVRDEIEHLLDDNEDMADLYLTRKWIQNQQSEALLGPAASNGILPAAPHL-HRLN 119
            ARVQKVRDE+E LLDD++DMADLYL+RK      +  + G   +N    A+P +  +++
Sbjct: 210 TARVQKVRDELEQLLDDDDDMADLYLSRKLFG---ASPVSGSGQANW-FSASPTIGSKIS 265

Query: 120 SCHSASMMTGGSLDQDDVEELEMLFEAYFMQLDGTRNKILSVREYIDDTEDYVNIQLDNQ 179
               AS+ T    D++DVEELEML EAYFMQ+D T NK+ ++REYIDDTEDY+NIQLDN 
Sbjct: 266 RASRASLATVRG-DENDVEELEMLLEAYFMQIDSTLNKLTTLREYIDDTEDYINIQLDNH 324

Query: 180 RNELIQLQLTLTIASFAIALDTLIAGFFGMNIPCRWYHMDG-IFDYFVGVSSAGCFLLFL 238
           RN+LIQL+L L+  +  ++  +L+AG FGMNIP  W    G +F + V V+ A C  +F+
Sbjct: 325 RNQLIQLELFLSAGTVCLSFYSLVAGIFGMNIPYTWNDNYGYMFKWVVIVTGACCAAMFI 384

Query: 239 LILGYARWKKLLGS 252
           LI+ YAR+K L+GS
Sbjct: 385 LIMSYARYKGLVGS 398


>30131.m006875 RNA splicing protein mrs2, mitochondrial, putative
          Length = 447

 Score =  214 bits (544), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 116/267 (43%), Positives = 168/267 (62%), Gaps = 18/267 (6%)

Query: 2   LPFEFQVLEVALEVVCTYLDSNVADLERDAYPVLDELARNVSTKNLEHVRSLKSNLTRLL 61
           LPFEF+ LEVALE  CT+LDS V++LE +AYP+LDEL   +ST NLE VR LKS L  L 
Sbjct: 179 LPFEFRALEVALEAACTFLDSQVSELEIEAYPLLDELTSKISTLNLERVRRLKSRLVALT 238

Query: 62  ARVQKVRDEIEHLLDDNEDMADLYLTRKWIQNQQS----EALLGPAASNG-------ILP 110
            RVQKVRDEIE L+DD+ DMA++YLT K  + + S    ++L+G  +++G       + P
Sbjct: 239 RRVQKVRDEIEQLMDDDGDMAEMYLTEKKGRMESSFYGDQSLMGFRSNDGGISLSAPVSP 298

Query: 111 --AAPHLHRLNSCHSASM-----MTGGSLDQDDVEELEMLFEAYFMQLDGTRNKILSVRE 163
             + P   RL    S +      M       + +E+LEML EAYF+ +D T NK+ S++E
Sbjct: 299 VSSPPDSRRLEKSLSIARSRHESMKSSESATESIEQLEMLLEAYFVVIDSTLNKLTSLKE 358

Query: 164 YIDDTEDYVNIQLDNQRNELIQLQLTLTIASFAIALDTLIAGFFGMNIPCRWYHMDGIFD 223
           YIDDTED++NIQLDN RN+LIQ +L LT A+F +A+  ++AG FGMN     +     F 
Sbjct: 359 YIDDTEDFINIQLDNVRNQLIQFELLLTTATFVVAIFGVVAGIFGMNFAIPMFDDPRAFK 418

Query: 224 YFVGVSSAGCFLLFLLILGYARWKKLL 250
           + + ++      +F   + + ++++L+
Sbjct: 419 WVLIITGVAGITIFCAFVWFFKYRRLM 445


>29883.m002003 RNA splicing protein mrs2, mitochondrial, putative
          Length = 392

 Score =  207 bits (528), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 129/258 (50%), Positives = 175/258 (67%), Gaps = 15/258 (5%)

Query: 1   ELPFEFQVLEVALEVVCTYLDSNVADLERDAYPVLDELARNVSTKNLEHVRSLKSNLTRL 60
           E PFEF+ LEVALE +C++LD+   +LE DAYP LDEL   +S+ NL+ VR LKS++TRL
Sbjct: 144 EFPFEFRALEVALEAICSFLDARTRELETDAYPALDELTSKISSLNLDRVRKLKSSMTRL 203

Query: 61  LARVQKVRDEIEHLLDDNEDMADLYLTRKWIQNQQSEALLGPAASNGILP----AAPHL- 115
             RVQK+RDE+E LLDD++DMADLYL+RK   +        P +S G  P    ++P + 
Sbjct: 204 TNRVQKIRDELEQLLDDDDDMADLYLSRKLASS-------SPISSYGAPPNWFLSSPTIG 256

Query: 116 HRLNSCHSASMMTGGSLDQDDVEELEMLFEAYFMQLDGTRNKILSVREYIDDTEDYVNIQ 175
            +++    AS+ T     + DVEELEML EAYFMQ+DGT NK+ ++REYIDDTEDY+NIQ
Sbjct: 257 SKISRTSRASVTTMQG--EHDVEELEMLLEAYFMQIDGTLNKLATLREYIDDTEDYINIQ 314

Query: 176 LDNQRNELIQLQLTLTIASFAIALDTLIAGFFGMNIPCRWYHMDG-IFDYFVGVSSAGCF 234
           LDN RN+LIQL+L L   +  +++ +L+A  FGMN+   W    G +F + V ++S  C 
Sbjct: 315 LDNHRNQLIQLELFLCSGTVCLSVYSLVAAIFGMNLQYTWREGHGYVFKWVVILTSLICA 374

Query: 235 LLFLLILGYARWKKLLGS 252
            LF  I+ YAR K L+GS
Sbjct: 375 TLFASIISYARHKGLVGS 392


>30099.m001730 RNA splicing protein mrs2, mitochondrial, putative
          Length = 451

 Score =  204 bits (518), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 111/255 (43%), Positives = 163/255 (63%), Gaps = 6/255 (2%)

Query: 2   LPFEFQVLEVALEVVCTYLDSNVADLERDAYPVLDELARNVSTKNLEHVRSLKSNLTRLL 61
           LPFEF  LE  LE  C  L++    LE++A+P LD+L   +ST NLE VR +KS L  + 
Sbjct: 196 LPFEFVALEACLEAACGCLENEAKTLEQEAHPALDKLTSKISTLNLERVRQIKSRLVAIT 255

Query: 62  ARVQKVRDEIEHLLDDNEDMADLYLTRKWIQNQQSEALLGPAASNGILPAAPHLHRLNSC 121
            RVQKVRDE+EHLLDD+EDMA++YLT K +QN ++ +      +         L   +S 
Sbjct: 256 GRVQKVRDELEHLLDDDEDMAEMYLTEKLVQNLENSSASSLNENMDDEYDQTDLDDRDSH 315

Query: 122 HSASMMTGGSLDQD-DVEELEMLFEAYFMQLDGTRNKILSVREYIDDTEDYVNIQLDNQR 180
            + +  T  ++ +  DVEELEML EAYF+Q+DGT NK+ ++REY+DDTEDY+NI LD+++
Sbjct: 316 GTHTSTTRSAISKHLDVEELEMLLEAYFVQIDGTLNKLSTLREYVDDTEDYINIMLDDKQ 375

Query: 181 NELIQLQLTLTIASFAIALDTLIAGFFGMNIPCRWYHMD---GI--FDYFVGVSSAGCFL 235
           N L+Q+ + LT A+  I+   ++AG FGMNI    ++     G+  F + VG S AG   
Sbjct: 376 NHLLQMGVMLTTATLVISCCVVVAGIFGMNISIELFNEQMETGMQKFLWTVGGSCAGSVF 435

Query: 236 LFLLILGYARWKKLL 250
           L+++ + + + K+LL
Sbjct: 436 LYVVAIAWCKQKRLL 450


>30099.m001729 RNA splicing protein mrs2, mitochondrial, putative
          Length = 456

 Score =  199 bits (505), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 110/257 (42%), Positives = 160/257 (62%), Gaps = 8/257 (3%)

Query: 2   LPFEFQVLEVALEVVCTYLDSNVADLERDAYPVLDELARNVSTKNLEHVRSLKSNLTRLL 61
           LPFEF  LE  LE  C  L++    LE++A+P LD+L   +ST NLE VR +KS L  + 
Sbjct: 199 LPFEFVALEACLEAACGCLENEAKTLEQEAHPALDKLTSKISTLNLERVRQIKSRLVAIT 258

Query: 62  ARVQKVRDEIEHLLDDNEDMADLYLTRKWIQNQQSEALLGPAASNGILP--AAPHLHRLN 119
            RVQKVRDE+EHLLDD+EDMA++YLT K  Q+ ++         + +            +
Sbjct: 259 GRVQKVRDELEHLLDDDEDMAEMYLTEKSTQHLENSCTSSLNERDDMDDEYVQDDFDERD 318

Query: 120 SCHSASMMTGGSLDQD-DVEELEMLFEAYFMQLDGTRNKILSVREYIDDTEDYVNIQLDN 178
           S  + S  T  ++ +  DVEELEML EAYF+Q+DGT NK+ ++REY+DDTEDY+NI LD+
Sbjct: 319 SHGTRSSTTQSAISKHLDVEELEMLLEAYFVQIDGTLNKLSTLREYVDDTEDYINIMLDD 378

Query: 179 QRNELIQLQLTLTIASFAIALDTLIAGFFGMNIPCRWYH---MDGI--FDYFVGVSSAGC 233
           ++N L+Q+ + LT A+  I+   ++AG FGMNI    +      G+  F + VG S AG 
Sbjct: 379 KQNHLLQMGVMLTTATLIISFGIVVAGIFGMNIKIELFKEAVETGMPKFLWTVGGSCAGS 438

Query: 234 FLLFLLILGYARWKKLL 250
             L+++ + + + K+LL
Sbjct: 439 LFLYVVAIAWCKHKRLL 455


>30174.m009101 RNA splicing protein mrs2, mitochondrial, putative
          Length = 460

 Score =  185 bits (469), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 103/254 (40%), Positives = 152/254 (59%), Gaps = 21/254 (8%)

Query: 1   ELPFEFQVLEVALEVVCTYLDSNVADLERDAYPVLDELARNVSTKNLEHVRSLKSNLTRL 60
           +LPFEF+ LE+ALE+ C +LD+ V +LE + YPVLDELA +++T NLE VR LK +L  L
Sbjct: 148 DLPFEFRALELALELTCMFLDAQVKELEIEIYPVLDELASSINTLNLERVRRLKGHLLAL 207

Query: 61  LARVQKVRDEIEHLLDDNEDMADLYLTRK------------WIQNQ--------QSEALL 100
             RVQKV DEIEHL++D+ DMA++YLT K            + QN            A +
Sbjct: 208 TQRVQKVHDEIEHLMEDDGDMAEMYLTEKKQKAEAYALDDLYFQNNIPGETKVVSKSAPV 267

Query: 101 GPAAS-NGILPAAPHLHRLNSCHSASMMTGGSLDQDDVEELEMLFEAYFMQLDGTRNKIL 159
            P  S +G+         + +      +T  S + ++V++LEML EAYF+ +D T +K+ 
Sbjct: 268 SPVRSISGVQKLQRTFSTVVTSSKHGSLTSSSTNYENVDQLEMLLEAYFVFIDNTLSKLF 327

Query: 160 SVREYIDDTEDYVNIQLDNQRNELIQLQLTLTIASFAIALDTLIAGFFGMNIPCRWYHMD 219
           S++EYIDDTED +NI+L N +N+LIQ +L LT A+F   +  ++ G FGMN     +   
Sbjct: 328 SLKEYIDDTEDLINIKLGNVQNQLIQFELLLTAATFVATIFAVVTGIFGMNFEDSIFDQP 387

Query: 220 GIFDYFVGVSSAGC 233
             F++ + V+   C
Sbjct: 388 STFNWVLIVTGILC 401


>29991.m000621 RNA splicing protein mrs2, mitochondrial, putative
          Length = 369

 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/229 (23%), Positives = 91/229 (39%), Gaps = 60/229 (26%)

Query: 2   LPFEFQVLEVALEVVCTYLDSNVADLERDAYPVLDELARNVSTKNLEHVRSLKSNLTRLL 61
           +PFE +V+E AL      L+  +  +E     +L+ L   ++   LE +R  K  L  L 
Sbjct: 163 MPFELEVVEAALLSRVQRLEQRLMAIEPRVQALLEVLPNRLTANILEELRISKQTLVELG 222

Query: 62  ARVQKVRDEIEHLLDDNEDMADLYLTRKWIQNQQSEALLGPAASNGILPAAP-------- 113
           +R   +R  +  LL+D  ++  + +  +          LG    N +  + P        
Sbjct: 223 SRAGALRQMLLDLLEDPHEIRRICIMGR-------NCTLGKGNDN-VECSVPLEKQIADE 274

Query: 114 -----------HLHRLNSCHSASMMTGGSLDQDDVEELEMLFEAYFMQLDGTRNKILSVR 162
                      +L R  SCH  S            E L          LD  +       
Sbjct: 275 EEEEIEMLLENYLQRCESCHGQS------------ERL----------LDSAK------- 305

Query: 163 EYIDDTEDYVNIQLDNQRNELIQLQLTLTIASFAIALDTLIAGFFGMNI 211
               + ED + + L ++R E+ +++L L + +F +A+  LIAG FGMN+
Sbjct: 306 ----EMEDSIAVNLSSRRLEVSRVELLLQVGTFCVAVGALIAGIFGMNL 350