Jatropha Genome Database

JcCB0155891.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0155891.10 + phase: 2 /pseudo/partial
         (98 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30064.m000498 dihydrolipoamide succinyltransferase component of ...   159   3e-40
31488.m000025 dihydrolipoamide acetyltransferase component of py...    60   3e-10
32909.m000024 dihydrolipoamide acetyltransferase component of py...    56   5e-09
29726.m004073 lipoamide acyltransferase component of branched-ch...    52   6e-08

>30064.m000498 dihydrolipoamide succinyltransferase component of
           2-oxoglutarate dehydrogenase, putative
          Length = 469

 Score =  159 bits (401), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 76/79 (96%), Positives = 77/79 (97%)

Query: 20  GVYGSLLSTPIINPPQSAILGMHSIVSRPMVVDGNVVPRPMMYIALTYDHRLIDGREAVF 79
           GVYGSLLSTPIINPPQSAILGMHSIVSRPMVV GNVVPRPMMYIALTYDHRLIDGREAVF
Sbjct: 391 GVYGSLLSTPIINPPQSAILGMHSIVSRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVF 450

Query: 80  FLRRIKDVVEDTRRLLLDV 98
           FLRRIKDVVED RRLLLD+
Sbjct: 451 FLRRIKDVVEDPRRLLLDI 469


>31488.m000025 dihydrolipoamide acetyltransferase component of
           pyruvate dehydrogenase, putative
          Length = 113

 Score = 59.7 bits (143), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 50/84 (59%), Gaps = 2/84 (2%)

Query: 15  NILTVGVYGSLLSTPIINPPQSAILGMHSIVSRPMVVD--GNVVPRPMMYIALTYDHRLI 72
            I ++G  G  + TPIIN P+ AILG+     +P+     G   PR +M ++L+YDHR+I
Sbjct: 30  TISSLGGIGGTMFTPIINCPEVAILGVSRAAMQPVYNKDTGGFDPRLIMPLSLSYDHRVI 89

Query: 73  DGREAVFFLRRIKDVVEDTRRLLL 96
           DG +   F   ++ ++ D RRLLL
Sbjct: 90  DGADGARFTSHLRVMLSDVRRLLL 113


>32909.m000024 dihydrolipoamide acetyltransferase component of
           pyruvate dehydrogenase, putative
          Length = 223

 Score = 55.8 bits (133), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 38/65 (58%)

Query: 28  TPIINPPQSAILGMHSIVSRPMVVDGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDV 87
           TPIIN PQ AILG+  + +RP+     V   P+M + L +DHR +DG  A  FL  +K  
Sbjct: 159 TPIINSPQVAILGVTRVAARPVARGNEVAIAPLMGLHLVFDHRAVDGFPAALFLTDLKRR 218

Query: 88  VEDTR 92
           +E  +
Sbjct: 219 LEAAK 223


>29726.m004073 lipoamide acyltransferase component of branched-chain
           alpha-keto acid dehydrogenase, putative
          Length = 504

 Score = 52.0 bits (123), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 1/79 (1%)

Query: 19  VGVYGSLLSTPIINPPQSAILGMHSIVSRPMVVD-GNVVPRPMMYIALTYDHRLIDGREA 77
           +G  G     PIIN P+ AI+ +  I   P   D GNV P  +M + +  DHR++DG   
Sbjct: 423 IGAIGGKFGAPIINLPEVAIIAIGRIQKVPQFADDGNVYPASIMTVNIGADHRVLDGATV 482

Query: 78  VFFLRRIKDVVEDTRRLLL 96
             F    K ++E    L+L
Sbjct: 483 ARFCNEWKQLIEKPELLML 501