Jatropha Genome Database

JcCB0155101.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0155101.20 + phase: 0 /partial
         (93 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30147.m013797 Ubiquinone biosynthesis protein coq-8, putative         163   1e-41

>30147.m013797 Ubiquinone biosynthesis protein coq-8, putative
          Length = 503

 Score =  163 bits (413), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 75/89 (84%), Positives = 80/89 (89%)

Query: 3  PPVDFKDIQDKLSFHFRPWQRSFQFWVRAVDVYTGYKVFQLRVSLVKDVQKQEAMWERQH 62
          P +DFKDIQ KLS   RPWQRS QFWVRAVD+Y GYKVFQ+RVS VKDVQKQEAMWE QH
Sbjct: 5  PSLDFKDIQYKLSTQLRPWQRSLQFWVRAVDIYAGYKVFQVRVSFVKDVQKQEAMWEMQH 64

Query: 63 ELAADKIYAMCSDLGGFFLKIAQIIGKPD 91
          ELAADKIYAMCSDLGGFFLK+AQ+IGKPD
Sbjct: 65 ELAADKIYAMCSDLGGFFLKVAQVIGKPD 93