Jatropha Genome Database

JcCB0151651.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0151651.10 + phase: 1 /pseudo/partial
         (168 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30217.m000264 RING finger protein, putative                           125   8e-30

>30217.m000264 RING finger protein, putative
          Length = 224

 Score =  125 bits (315), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 64/110 (58%), Positives = 72/110 (65%), Gaps = 2/110 (1%)

Query: 21  YARLRAIAHEIMTQRNHTQRTCGNAVVVDVDSGRTTRLTYXXXXXXXXXXXXHAVINCEH 80
           +A  +  A     QRNH QRT G+ V+VDVDSGRTTRLTY              +INC+H
Sbjct: 79  FAEAKNNAQRNNLQRNHAQRTRGSTVIVDVDSGRTTRLTYAQNKRRRVSSN-QTIINCDH 137

Query: 81  YVNLESSGSSMRDNAQQLQXXXXXKEPTFNCPICMGPFVEETSTKCGHIF 130
           YVNLESS SSMRDN Q        +  TFNCPICMGPF+EETSTKCGHIF
Sbjct: 138 YVNLESSSSSMRDNIQPRPPPPPKEP-TFNCPICMGPFIEETSTKCGHIF 186