Jatropha Genome Database

JcCB0151131.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0151131.10 + phase: 0 /partial
         (127 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

27810.m000636 conserved hypothetical protein                          167   2e-42

>27810.m000636 conserved hypothetical protein
          Length = 1054

 Score =  167 bits (422), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 83/126 (65%), Positives = 94/126 (74%)

Query: 2   LMPEWSKSVQDWNSMIGPLIDKMFAEPSNATIVRFLSYISEHLAEAADVVLHRVLLQMQS 61
           LMPEW K+VQ+WNSMI  L+DKMFAEP+NA IV+FLSYISE LAEAADVVL+ VL QM+ 
Sbjct: 591 LMPEWCKNVQNWNSMIILLLDKMFAEPANAIIVKFLSYISERLAEAADVVLYYVLSQMKP 650

Query: 62  QKGIKKGLLSRWESKSCQNEDLMGMQQSLFEXXXXXXXXXXXXXXVFNDLNSFIMYGQLP 121
           QKGI +GLLS W+S+SC NEDLM MQQ+LFE              VFNDL S  MYGQLP
Sbjct: 651 QKGINEGLLSTWKSRSCNNEDLMKMQQTLFERLCPLLIIRLLPLRVFNDLESSTMYGQLP 710

Query: 122 VQGITH 127
            Q IT 
Sbjct: 711 SQVITQ 716