Jatropha Genome Database

JcCB0149161.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0149161.10 + phase: 0 /pseudo/partial
         (226 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29908.m006268 DNA binding protein, putative                           231   2e-61

>29908.m006268 DNA binding protein, putative
          Length = 608

 Score =  231 bits (590), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 121/154 (78%), Positives = 130/154 (84%), Gaps = 2/154 (1%)

Query: 75  CDLEYELDVFPDVSTEASTEAAACVKVLIASGLPSDSTHPNSTTVEAPLTINIPNGKPCR 134
            DLEYEL+ FPDVS+EAS EAAACVKVLIASG  SDSTHPNS TVEAPLTINIPNG+  R
Sbjct: 94  SDLEYELEAFPDVSSEASAEAAACVKVLIASGATSDSTHPNSATVEAPLTINIPNGQSAR 153

Query: 135 FTSENLQPAIMKGVNITVPVSVQKQPLPAVTSAEGLDANGSGSG--VPRRKRKPWSDSED 192
             SEN QPA M+G+NITVPVS+QKQPLP V S E  D NG G+G   PRRKRKPWS++ED
Sbjct: 154 AISENSQPATMRGMNITVPVSIQKQPLPTVASTEVFDGNGLGNGNIPPRRKRKPWSEAED 213

Query: 193 LELIAAVQKYGEGNWANILRSEVKWDRTASQLSQ 226
           LELIAAVQKYGEGNWANILRSE  WDRTASQLSQ
Sbjct: 214 LELIAAVQKYGEGNWANILRSEFTWDRTASQLSQ 247