Jatropha Genome Database

JcCB0148821.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0148821.10 - phase: 0 /partial
         (182 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29904.m002981 hypothetical protein                                    295   1e-80

>29904.m002981 hypothetical protein
          Length = 791

 Score =  295 bits (754), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 145/184 (78%), Positives = 157/184 (85%), Gaps = 5/184 (2%)

Query: 1   RSSSTLHANRQPQPRSFHNPSNRRVAQARVPATRTSQLRSRLFNRSPAALSRARNPSLAT 60
           R  +T+H+N QPQPRSF NPSNRR  Q+R+PATRTSQLR+RLFNR PA L RARN SL +
Sbjct: 580 RRPATMHSNTQPQPRSFQNPSNRRGTQSRLPATRTSQLRNRLFNRPPARLLRARNHSLTS 639

Query: 61  LSTARNFQFPLGMDIDMRLDILEALEEFSDMSMTTSRILQVQRDFNENDYEMLLALDENN 120
            ST RNFQFPL MD++MRLDILEALE   DMS+T S ILQVQRDFNENDYEMLLALDENN
Sbjct: 640 SSTTRNFQFPLSMDLEMRLDILEALE---DMSVTNSHILQVQRDFNENDYEMLLALDENN 696

Query: 121 HQRGASVNRINSLPESTVQTDNFEETCAICLETPTVGETIRHLPCLHKFHKDSN--MEAI 178
            Q GAS NRINSLPES +QTDNFEETCAICLETPT+GETIRHLPCLHKFHKD N  MEAI
Sbjct: 697 QQHGASTNRINSLPESVLQTDNFEETCAICLETPTIGETIRHLPCLHKFHKDVNPIMEAI 756

Query: 179 FLKG 182
           F KG
Sbjct: 757 FAKG 760