Jatropha Genome Database

JcCB0148531.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0148531.10 - phase: 2 /pseudo/partial
         (171 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

28166.m001054 DNA binding protein, putative                            83   6e-17
29842.m003681 DNA binding protein, putative                            82   9e-17
29603.m000513 DNA binding protein, putative                            76   8e-15
29830.m001386 DNA binding protein, putative                            47   4e-06

>28166.m001054 DNA binding protein, putative
          Length = 235

 Score = 83.2 bits (204), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 44/108 (40%), Positives = 64/108 (59%)

Query: 6   SARSRTKACREKMRRDRLNERFMDLYSILEPGNFQNSNKVAILRYAAHLLNHLRIEAKEL 65
           S  S +KACREK+RRDRLN++F++L SILEPG    ++K AIL  A  ++  LR EA++L
Sbjct: 73  SCASSSKACREKLRRDRLNDKFLELGSILEPGRPPKTDKAAILIDAVRMVTQLRGEAQKL 132

Query: 66  KDKNKFLQETIXXXXXXXXXXXXXXXXXXAEKKRMENAVESLSIPSSF 113
           KD N  LQE I                   EK+++E  +++++   SF
Sbjct: 133 KDSNSSLQEKIKELKAEKNELRDEKQRLKVEKEKLEQQLKAVNAQPSF 180


>29842.m003681 DNA binding protein, putative
          Length = 229

 Score = 82.4 bits (202), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 43/111 (38%), Positives = 62/111 (55%)

Query: 11  TKACREKMRRDRLNERFMDLYSILEPGNFQNSNKVAILRYAAHLLNHLRIEAKELKDKNK 70
           +KACREKMRRD+LN+RFM+L ++L+PG     +K  IL  A  ++N LR EA++LK+ N+
Sbjct: 72  SKACREKMRRDKLNDRFMELGALLDPGRPPKMDKSVILADAMKMVNQLRAEAQKLKESNE 131

Query: 71  FLQETIXXXXXXXXXXXXXXXXXXAEKKRMENAVESLSIPSSFAPQFSFYP 121
            LQE +                   EK+ +E  V +LS  + F P     P
Sbjct: 132 NLQEKVNELKVEKNELRDEKQRLKTEKESIERQVNALSASARFLPHLPAIP 182


>29603.m000513 DNA binding protein, putative
          Length = 219

 Score = 75.9 bits (185), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 41/106 (38%), Positives = 63/106 (59%)

Query: 4   DSSARSRTKACREKMRRDRLNERFMDLYSILEPGNFQNSNKVAILRYAAHLLNHLRIEAK 63
           DS ++  TKACREK+RR+RLN+RF DL S+LEP     ++K ++L  A  +LN L+ EA+
Sbjct: 62  DSCSKPVTKACREKLRRERLNDRFQDLSSVLEPERPARTDKPSLLDDAIRVLNQLKTEAQ 121

Query: 64  ELKDKNKFLQETIXXXXXXXXXXXXXXXXXXAEKKRMENAVESLSI 109
           ELK+ N+ L E I                  A+K+R E  ++ +++
Sbjct: 122 ELKETNEKLLEEIKCLKAEKNELREEKLTLKADKERTEQQLKIMAV 167


>29830.m001386 DNA binding protein, putative
          Length = 317

 Score = 47.0 bits (110), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 37/61 (60%), Gaps = 1/61 (1%)

Query: 6  SARSRTKACREKMRRDRLNERFMDLYSILEPGNFQNSNKVAILRYAAHLLNHLRIEAKEL 65
          +A+   KA REK+RRDRLNE+F++L + L+P   +N +K  IL     +L  L  E   L
Sbjct: 40 AAKKVQKADREKLRRDRLNEQFLELGNTLDPDRPKN-DKATILTDTIQMLKDLTAEVSRL 98

Query: 66 K 66
          K
Sbjct: 99 K 99