Jatropha Genome Database

JcCB0147481.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0147481.10 + phase: 0 /partial
         (261 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

28693.m000103 Pre-rRNA-processing protein ESF1, putative              361   e-100

>28693.m000103 Pre-rRNA-processing protein ESF1, putative
          Length = 722

 Score =  361 bits (927), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 185/264 (70%), Positives = 201/264 (76%), Gaps = 3/264 (1%)

Query: 1   AGDLYVVLSSFLPKRGAIKSVAVYPSEFGLERMKEEELHGPVGLFXXXXXXXXXXXXXXX 60
           A DLYVVL SFLPK G I SVAVYPSEFGL+RM+EEELHGPVGLF               
Sbjct: 203 AVDLYVVLRSFLPKGGDILSVAVYPSEFGLQRMEEEELHGPVGLFDDEKKKNDEDEDEDE 262

Query: 61  XXXXX---LRAYEKSRLRYFYAVVECDSIATAEHLYKACDGVEFERSSNVLDLRFVPDSM 117
                   LRAYEKSRLRY+YAVVECDS+ATAEHLYKACDGVEFERSSNV DLRFVPDSM
Sbjct: 263 DDEIDEEKLRAYEKSRLRYYYAVVECDSVATAEHLYKACDGVEFERSSNVFDLRFVPDSM 322

Query: 118 EFKHPPRDIAEEAPTNYDGLDFHTKALQHSNIAISWDEDEPQRVKTLKRKFNADQLADLE 177
           EFKHPPRDIA+EAPT+Y+GLDFHTKALQHSNI ISWDEDEPQRVKTLKRKF ADQLA++E
Sbjct: 323 EFKHPPRDIAKEAPTSYEGLDFHTKALQHSNIPISWDEDEPQRVKTLKRKFTADQLAEME 382

Query: 178 LKEFLAXXXXXXXXXXXXXVAEGEVDKKIKKRDKYRALIXXXXXXXXXXXXXXXXMEITF 237
           L+EFLA              AEGE D+K KKRDKYRALI                MEITF
Sbjct: 383 LQEFLASDGSESDDDGNDDNAEGEADRKEKKRDKYRALIQSGDGSDGEDEEEGQEMEITF 442

Query: 238 HTGLEGLSKRLLERKDKKSESVWE 261
           +TGLEGLSKR+LE++DKKSE+VWE
Sbjct: 443 NTGLEGLSKRILEKRDKKSETVWE 466