Jatropha Genome Database

JcCB0147231.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0147231.10 + phase: 1 /partial
         (274 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30147.m014304 conserved hypothetical protein                          404   e-113

>30147.m014304 conserved hypothetical protein
          Length = 308

 Score =  404 bits (1039), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 202/270 (74%), Positives = 228/270 (84%), Gaps = 8/270 (2%)

Query: 7   LSIHPLIQLNIRPKFRAK--VTRKSLVIASRIDNSQTRENQQQELNLSILRFTFGIPGLD 64
           LSI+PLI     PKFRA   V  K+  I  RIDNSQ +++QQQ+LNLS+LRFTFGIPGLD
Sbjct: 4   LSINPLIT---HPKFRANNSVKSKNASIIVRIDNSQRKKDQQQDLNLSVLRFTFGIPGLD 60

Query: 65  ESYLPRWIGYGFGSLLLLNHFLGSNSAASPPQLRTEALGISLAAFSIALPFFGRFLKGVR 124
           ESYLPRWIGYGFGSLL+LNHFLGSNS  S PQ+RTEALG+SLAAFSIALP+FGRFLKG  
Sbjct: 61  ESYLPRWIGYGFGSLLVLNHFLGSNSVTSLPQMRTEALGLSLAAFSIALPYFGRFLKGAT 120

Query: 125 PMDQAALPGGAEQIFLMSENIFDTQKEDLAWATYVLLRNTNTIAVLISIQGGLCVRGYWK 184
           P+DQ ALP G+EQIF+MSEN+ DT KEDLAWATYVLLRNTN+IAVLI IQG LCVRGYW 
Sbjct: 121 PVDQTALPQGSEQIFVMSENVSDTLKEDLAWATYVLLRNTNSIAVLIYIQGELCVRGYWN 180

Query: 185 TPDNLSKAQLLDWFLKQIDSIGLFDLRDTLYFPQTAESGLWEMLPKGTRSLLVEPVHQAR 244
           TPDN+SKAQ++DWF  +I+ IGLFDL+DTLYFPQTAES LWEMLP+GTRSLLVEPV    
Sbjct: 181 TPDNISKAQVIDWFKGRIEDIGLFDLKDTLYFPQTAESRLWEMLPRGTRSLLVEPVLLQN 240

Query: 245 AKSANEMGKNEGFVLLASSMEYAYGDKDRA 274
           AK   EM + EGFVLLASS++ AY DKDRA
Sbjct: 241 AK---EMDRAEGFVLLASSIDTAYTDKDRA 267