Jatropha Genome Database

JcCB0143751.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0143751.20 + phase: 0 
         (135 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30170.m014026 conserved hypothetical protein                          166   3e-42
29912.m005506 conserved hypothetical protein                          112   7e-26
28093.m000125 conserved hypothetical protein                           88   9e-19
29863.m001061 conserved hypothetical protein                           86   6e-18

>30170.m014026 conserved hypothetical protein
          Length = 267

 Score =  166 bits (421), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 84/103 (81%), Positives = 89/103 (86%), Gaps = 1/103 (0%)

Query: 1   MATRDMEMEGDRELLIPVAEIPENAKSKTXXXXXXXXXXXXHRLSGVEALSKVIRSWASK 60
           MATR+M+MEGD ELLIPVAEIP+NAKSKT            HRLSG+EALS VIRSWASK
Sbjct: 1   MATREMQMEGDLELLIPVAEIPDNAKSKTSSPSSPIVASS-HRLSGLEALSTVIRSWASK 59

Query: 61  KFMTGCVILLPIAVTFYVTWGFVHFVDGFFSPVYNHLGINIFG 103
           KFMTGCVILLPIAVTFY+TWGFVHFVDGFFSPVYNHLGINIFG
Sbjct: 60  KFMTGCVILLPIAVTFYITWGFVHFVDGFFSPVYNHLGINIFG 102


>29912.m005506 conserved hypothetical protein
          Length = 242

 Score =  112 bits (279), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 60/103 (58%), Positives = 71/103 (68%), Gaps = 9/103 (8%)

Query: 2   ATRDMEMEGDRELLIPVAE-IPENAKSKTXXXXXXXXXXXXHRLSGVEALSKVIRSWASK 60
           ++RD E   DRELLIPVA+ +  + +SK                SG E   KV+RSWASK
Sbjct: 12  SSRDRER--DRELLIPVADSVNVDVESKPSSSSSSSH------HSGRETFYKVVRSWASK 63

Query: 61  KFMTGCVILLPIAVTFYVTWGFVHFVDGFFSPVYNHLGINIFG 103
           KFMTGCVIL PIAVTFY+TW F+HFVDGFFSP+Y  LGI+IFG
Sbjct: 64  KFMTGCVILFPIAVTFYITWWFIHFVDGFFSPIYAQLGIDIFG 106


>28093.m000125 conserved hypothetical protein
          Length = 258

 Score = 88.2 bits (217), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 37/56 (66%), Positives = 46/56 (82%)

Query: 48  EALSKVIRSWASKKFMTGCVILLPIAVTFYVTWGFVHFVDGFFSPVYNHLGINIFG 103
           EA   +++SW SKKFMTGCV+L PIAVTF++TW  + FVDGFFSP+Y  LGI+IFG
Sbjct: 40  EACCFILQSWVSKKFMTGCVVLFPIAVTFFITWWLIQFVDGFFSPIYERLGIDIFG 95


>29863.m001061 conserved hypothetical protein
          Length = 264

 Score = 85.9 bits (211), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 37/56 (66%), Positives = 46/56 (82%)

Query: 48  EALSKVIRSWASKKFMTGCVILLPIAVTFYVTWGFVHFVDGFFSPVYNHLGINIFG 103
           +A   V++SW SKKFMTGCV+L P+AVTF VTW F+ FVDGFFSP+Y  LG++IFG
Sbjct: 40  KACYAVLQSWVSKKFMTGCVVLFPVAVTFLVTWWFIQFVDGFFSPLYAKLGVDIFG 95