Jatropha Genome Database

JcCB0143121.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0143121.10 - phase: 0 /pseudo
         (319 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30204.m001816 Phytochrome-interacting factor, putative                218   2e-57

>30204.m001816 Phytochrome-interacting factor, putative
          Length = 572

 Score =  218 bits (556), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 130/264 (49%), Positives = 153/264 (57%), Gaps = 33/264 (12%)

Query: 1   MNHYVPDFEMDEDCAIPTSSTFTRPKKSITS-EDEIMELLWQNGQVVVQSQTQMSLKKL- 58
           M+HYVPDFEMD+DCAIPTSST  RPKKSITS EDE MELLW NGQVVVQ+Q   SLKK  
Sbjct: 1   MSHYVPDFEMDDDCAIPTSSTLVRPKKSITSTEDEFMELLWHNGQVVVQTQ---SLKKPQ 57

Query: 59  -PHSKYDDAVLPVEASNTRE-IRSTQE---------------HHQQQQHLFMQEDEMASW 101
             H KYDDAV+PV+ SN R+ IR+ QE               ++    +LFMQEDEMASW
Sbjct: 58  QQHHKYDDAVIPVDQSNPRDVIRTAQEHHNHNNNSNNNNNNNNNTHNSNLFMQEDEMASW 117

Query: 102 LHYPLNDTNFDQDFCADLLYPXXXXXX--------XXXXXXXXXXXXXIQNXXXXXXXXX 153
           LHYP+NDTNFDQDFCADLLYP                           +++         
Sbjct: 118 LHYPINDTNFDQDFCADLLYPTSAAAACVTSTTTNTTTTTTTNNSFAPVRSLHNPEIRSQ 177

Query: 154 XXXXXXXXXXXXXXXXXXXXXXXVHNFAYFSKHRARGG--VLEPGPSNLRHAVRESTVVD 211
                                  V NFAYFS+HRAR G  V E GPS ++   RESTVVD
Sbjct: 178 QPPVSATATASRPPIPPTRRAQVVQNFAYFSRHRARDGANVAESGPSKVKPVARESTVVD 237

Query: 212 SSDTP-AMPSESRVSEAAVARNTA 234
           SS+TP  +  +SR+SEAA  R+T+
Sbjct: 238 SSETPEGIALDSRISEAAFGRSTS 261