Jatropha Genome Database

JcCB0140211.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0140211.10 - phase: 2 /partial
         (421 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30209.m001534 homogentisate 1,2-dioxygenase, putative                 730   0.0  

>30209.m001534 homogentisate 1,2-dioxygenase, putative
          Length = 457

 Score =  730 bits (1885), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/387 (89%), Positives = 366/387 (94%), Gaps = 1/387 (0%)

Query: 36  KRNGRDFPSDDGDYQSGFGNSFESEAISGALPRGQNSPLLCPYGLYAEQLSGSSFTSPRK 95
           K NGRDFPSDD DY SGFGN+FESEAI GALPRGQNSPL+CPYGLYAEQ+SGSSFTSPRK
Sbjct: 5   KSNGRDFPSDDHDYLSGFGNTFESEAIHGALPRGQNSPLICPYGLYAEQISGSSFTSPRK 64

Query: 96  LNQRSWFYRIKPSVTHEPFKPRIPSNEKLASEFDKTNS-RTTPTQLRWKPMEIPDSPTDF 154
           L+QRSW YRIKPSVTHEPFKPR+PS+ K+ SEFDKT+S  TTPTQLRWKP++IPDSPTDF
Sbjct: 65  LSQRSWLYRIKPSVTHEPFKPRVPSHGKIVSEFDKTDSCTTTPTQLRWKPVDIPDSPTDF 124

Query: 155 VDGLYTVCGAGSSFLRHGFAIHMYTANKSMDNCAFCNADGDFLIVPQKGRLWITTECGKL 214
           +DGL+T+CGAGSSFLRHGFAIHMYTANKSM NCA CNADGDFL+VPQ+GRLWITTECGKL
Sbjct: 125 IDGLFTICGAGSSFLRHGFAIHMYTANKSMGNCALCNADGDFLVVPQEGRLWITTECGKL 184

Query: 215 QVTPGEIVVLPQGFRFAVDLPDGPSRGYACEIFGTHFQLPDLGPIGGNGLAAPRDFLVPK 274
           QV+PGE+VVLPQGFRFAVDLPDGPSRGY  EIFGTHFQLPDLGPIG NGLAAPRDFLVPK
Sbjct: 185 QVSPGEVVVLPQGFRFAVDLPDGPSRGYVAEIFGTHFQLPDLGPIGANGLAAPRDFLVPK 244

Query: 275 AWFEEASRPGYTIIQKFGGELFTAKQDFSPFNVVAWHGNYVPYKYDLKKFCPYNTVLFDH 334
           AW+EE   PGYTIIQKFGGELFTAKQDFSPFNVVAWHGN+VPYKYDLKKFCPYNTVL DH
Sbjct: 245 AWYEEGPCPGYTIIQKFGGELFTAKQDFSPFNVVAWHGNFVPYKYDLKKFCPYNTVLIDH 304

Query: 335 SDPSINTVLTAPTDKPGVALLDFVIFPSRWVVAEHTFRPPYYHRNCMSEFMGLIYGGYEA 394
           SDPSINTVLTA TDKPGVALLDFVIFP RW+VAEHTFRPPYYHRNCMSEFMGLIYGGYEA
Sbjct: 305 SDPSINTVLTASTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIYGGYEA 364

Query: 395 KADGFIPGAASLHSCMTPHGPDTKTYE 421
           KADGF+PG ASLHSCMTPHGPDTKTYE
Sbjct: 365 KADGFVPGGASLHSCMTPHGPDTKTYE 391