Jatropha Genome Database

JcCB0139081.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0139081.10 + phase: 1 /partial
         (140 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30174.m009040 conserved hypothetical protein                          105   6e-24
29822.m003482 Protein C10orf22, putative                               95   1e-20
29381.m000075 conserved hypothetical protein                           65   7e-12

>30174.m009040 conserved hypothetical protein
          Length = 165

 Score =  105 bits (262), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 54/139 (38%), Positives = 80/139 (57%), Gaps = 6/139 (4%)

Query: 5   YWNTHIEHFRWSRYQ--YIQRLSSFFWKFTARPAKLVRDCEMIAPCGTTVLYPSSGGNIH 62
           Y + H++ + W +    Y  + SS+    + + AKL  D  + APCGT+VLYP SGGN+H
Sbjct: 30  YGSLHVKAYDWVQPTCIYDSKGSSYP---SVKLAKLAVDKVLTAPCGTSVLYPKSGGNVH 86

Query: 63  CFKALTPCALFDVLSPPYSSEDGRHCSYFRRVPARVLPEG-AAELCGIQPSEVAWLEETP 121
           CF A+TPCA+ D+L+PPY  + GR C+Y+   P      G   E+   +  + AWL E  
Sbjct: 87  CFTAVTPCAVLDILTPPYKEDAGRKCTYYHDYPYSPFSTGIGTEIGDEKEGDYAWLAEID 146

Query: 122 PPENFVVQRGLYKGPNIRL 140
            PE   ++ G+Y GP + L
Sbjct: 147 TPEYLYMRPGVYAGPALNL 165


>29822.m003482 Protein C10orf22, putative
          Length = 288

 Score = 94.7 bits (234), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 50/135 (37%), Positives = 69/135 (51%), Gaps = 2/135 (1%)

Query: 5   YWNTHIEHFRWSRYQYIQRLSSFFWKFTARPAKLVRDCEMIAPCGTTVLYPSSGGNIHCF 64
           +   HI+ + W     +   S+       R AK+  D +  APC   +LYP  GGN+HCF
Sbjct: 152 FGKMHIKSYDWVDEDSVNG-SAVVNPSEVRLAKVKIDSDFTAPCNPCILYPVDGGNMHCF 210

Query: 65  KALTPCALFDVLSPPYSSEDGRHCSYFRRVPARVLPEGAAELCGIQPSEVAWLEE-TPPP 123
            A T CA+ DVL PPYS  +GRHC+Y+   P          L   +    AWL+E T  P
Sbjct: 211 TAATACAVLDVLGPPYSDPEGRHCTYYNDFPFANFSVDGVSLPEEEREGYAWLQERTKQP 270

Query: 124 ENFVVQRGLYKGPNI 138
           ++F +   LY+GP I
Sbjct: 271 DDFKMVGELYRGPKI 285


>29381.m000075 conserved hypothetical protein
          Length = 123

 Score = 65.5 bits (158), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 30/35 (85%), Positives = 31/35 (88%)

Query: 100 PEGAAELCGIQPSEVAWLEETPPPENFVVQRGLYK 134
           PEGAAELCGI+PSEV WLEET PPENFVVQRG  K
Sbjct: 17  PEGAAELCGIEPSEVTWLEETQPPENFVVQRGREK 51