Jatropha Genome Database

JcCB0136181.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0136181.20 - phase: 0 /pseudo/partial
         (213 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29929.m004750 heat shock protein, putative                            155   1e-38
29485.m000142 heat shock protein, putative                             54   4e-08

>29929.m004750 heat shock protein, putative
          Length = 253

 Score =  155 bits (393), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 76/125 (60%), Positives = 86/125 (68%), Gaps = 2/125 (1%)

Query: 29  IVKAKAA-ENRDNLDHLXXXXXXXXXXXXXXXXRTAPVAPVGLWDRFPTARTVQQXXXXX 87
           ++KA AA E+RDNLDHL                R A VAPVGLWDRFPTARTVQQ     
Sbjct: 44  VIKAMAASESRDNLDHLQRVNGKQHQQQAQPKKRVARVAPVGLWDRFPTARTVQQMMETM 103

Query: 88  XXXXXDPFAYTGTWPSEPPSPVERSGYSRGRTPWEIKEGETEYKMRFDMPGMTKEDVKVW 147
                DPF Y+ +WP+ P +P+E SGY RGRTPWEIKEGE EYKMRFDMPGMTKEDVKVW
Sbjct: 104 ERMMDDPFTYSSSWPT-PAAPIEGSGYGRGRTPWEIKEGENEYKMRFDMPGMTKEDVKVW 162

Query: 148 VKRRC 152
           V+ + 
Sbjct: 163 VEEKM 167


>29485.m000142 heat shock protein, putative
          Length = 234

 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 42/85 (49%), Gaps = 10/85 (11%)

Query: 65  VAPVGLWDRFPTARTVQQXXXXXXXXXXDPFAYTGTWPSEPPSPVERSGYSRGRTPWEIK 124
           ++P G  D     RT++Q          D     G           R+G    R PW+IK
Sbjct: 86  ISPFGFMDSLSPMRTMRQMLDTMDRLFEDAMTVPGR---------SRAG-GEVRAPWDIK 135

Query: 125 EGETEYKMRFDMPGMTKEDVKVWVK 149
           + E E +MRFDMPG++KEDVKV V+
Sbjct: 136 DEEHEIRMRFDMPGLSKEDVKVSVE 160