Jatropha Genome Database

JcCB0135511.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0135511.10 - phase: 2 /partial
         (247 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30078.m002288 Transcription factor Dp-1, putative                     313   3e-86

>30078.m002288 Transcription factor Dp-1, putative
          Length = 360

 Score =  313 bits (803), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 168/254 (66%), Positives = 177/254 (69%), Gaps = 10/254 (3%)

Query: 2   HQDDVDKNPATIAAVSRGGTRSWGNXXXXXXXXXXXXXXXXX-XXXXEQAMATPASDSTF 60
           HQ+D DKN A   +   G  RSWGN                      EQAMATPASDSTF
Sbjct: 7   HQEDGDKNLAATVSKGGGAARSWGNTTVSGGQSVSTSGSVGSPSSRSEQAMATPASDSTF 66

Query: 61  LRLNHLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGRGLRQFSMKVCEKVESKGTTTYN 120
           LRLNHL                             SGRGLRQFSMKVCEKVESKGTTTYN
Sbjct: 67  LRLNHLDIHADDAATQDAAANKKKKRGQRAVGADKSGRGLRQFSMKVCEKVESKGTTTYN 126

Query: 121 EVADELVAEFADPSNSVSSPDQQQYDEKNIRRRVYDALNVLMALDIISKDKKEIQWKGLP 180
           EVADELVAEFADP NSVSSPDQQQYDEKNIRRRVYDALNVLMALDIISKDKKEIQWKGLP
Sbjct: 127 EVADELVAEFADPGNSVSSPDQQQYDEKNIRRRVYDALNVLMALDIISKDKKEIQWKGLP 186

Query: 181 RTSLSDIEELKAERLALRNRIEKKS-------AYLQELEEQYVGLQNLINRNEQLYSSGN 233
           RTSLSDIEELKAERL LR+RI  K+        +L  +  +Y+GLQNLINRNEQLY+SGN
Sbjct: 187 RTSLSDIEELKAERLGLRSRIXXKNWRNNWIVDFLSLM--KYIGLQNLINRNEQLYNSGN 244

Query: 234 APSGGVSLPFILVQ 247
           APSGGVSLPFILVQ
Sbjct: 245 APSGGVSLPFILVQ 258