Jatropha Genome Database

JcCB0135201.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0135201.10 + phase: 0 /partial
         (141 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30190.m011279 hypothetical protein                                    254   8e-69

>30190.m011279 hypothetical protein
          Length = 1525

 Score =  254 bits (649), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 118/141 (83%), Positives = 131/141 (92%)

Query: 1    TLLSGASETAITTVISALSFSPDGEGLIAFSEHGLMIRWWSLGSMWWEKLNRNLVPVQCT 60
            TLLSGASETA+TTVISALSFSPDG+GL+AFSEHGLMIRWWSLGS+WWEKL+RNLVPVQCT
Sbjct: 1385 TLLSGASETAVTTVISALSFSPDGDGLVAFSEHGLMIRWWSLGSVWWEKLSRNLVPVQCT 1444

Query: 61   KLIFVPLWEGFSPNSSRTSIMASISGHDRQTNLQENARSLNYADSLKILIQNLDLSYRLE 120
            KLIFVP WEGFSPN SR+S+M +I GHDRQTNLQEN R  N+AD+LK+++ NLDLSYRLE
Sbjct: 1445 KLIFVPPWEGFSPNFSRSSVMINIMGHDRQTNLQENTRGSNHADNLKMVVHNLDLSYRLE 1504

Query: 121  WVGGRKVLLSRHGMELGTFPL 141
            WV  RKVLLSRHGMELGTFPL
Sbjct: 1505 WVSKRKVLLSRHGMELGTFPL 1525