Jatropha Genome Database

JcCB0134471.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0134471.10 + phase: 1 /partial
         (286 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29948.m000712 conserved hypothetical protein                          435   e-122
30204.m001742 conserved hypothetical protein                          175   2e-44

>29948.m000712 conserved hypothetical protein
          Length = 617

 Score =  435 bits (1119), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 209/279 (74%), Positives = 235/279 (84%)

Query: 1   FYDLYKNVPVLKATASRLCGPLFDWIETWEMVSRIKYLGTMLFLHNFQKAITWFLMXXXX 60
           FYDLYKNVPVLKATASRLCGPLFDWIETWEMVSRIKYLGTMLFLHNFQKAITW L     
Sbjct: 333 FYDLYKNVPVLKATASRLCGPLFDWIETWEMVSRIKYLGTMLFLHNFQKAITWLLTVTRT 392

Query: 61  XXXXXXXXXQPLLEPLMEVLGFLLPMWNVLIEVVENLVSIIWVATDSVFTAVIDLIQIVL 120
                    QPL EPLME+LGFLLPMWNVLIEVVE+L SI+WV   S+   V+DLIQ++L
Sbjct: 393 TRSFFSVFTQPLAEPLMELLGFLLPMWNVLIEVVESLCSIVWVVGGSICNIVVDLIQVIL 452

Query: 121 WPMWFIISMVWTIATSVLYPIFWILWEIFYAPIRMVLAIASFIALIGAWISELIGDLWRS 180
           WP+W IISM+W+IATS+LYP+FWILWE+ YAPIRMVLA+AS +A I A ISELIGD+WRS
Sbjct: 453 WPLWLIISMIWSIATSILYPMFWILWEVLYAPIRMVLAMASLVAFICASISELIGDIWRS 512

Query: 181 VSCIFRVASATEATISTYEVSMWRSLWNDLFSQVFRALRSILNGFVAFFTACNRHRLSIY 240
           +S IF+ ASA+EATISTYEVSMWRSLWND+FSQVFRALRSILNGFVAFFTACNRHRLSIY
Sbjct: 513 LSTIFQFASASEATISTYEVSMWRSLWNDIFSQVFRALRSILNGFVAFFTACNRHRLSIY 572

Query: 241 NHIQEFIRRIFGQAPRSQPSGYRHNKPTSGRQCLAEVGK 279
           NH Q+F  RIFG+A RSQPS  RH++   G + LA V +
Sbjct: 573 NHTQDFTGRIFGRAQRSQPSDSRHSRAPGGTRNLAGVNR 611


>30204.m001742 conserved hypothetical protein
          Length = 630

 Score =  175 bits (443), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 106/254 (41%), Positives = 150/254 (59%), Gaps = 10/254 (3%)

Query: 1   FYDLYKNVPVLKATASRLCGPLFDWIETWEMVSRIKYLGTMLFLHNFQKAITWFLMXXXX 60
           FYDLYKNVP+LKA AS L  P   WIE W+MVSRIKYLGTMLFL N QKAI WFL     
Sbjct: 346 FYDLYKNVPLLKAAASHLPWPFLKWIEAWDMVSRIKYLGTMLFLQNLQKAIKWFLRKTQL 405

Query: 61  XXXXXXXXXQPLLEPLMEVLGFLLPMWNVLIEVVENLVSIIWVATDSVFTAVIDLIQIVL 120
                    + L+  L E++  L P+W+   E+   +  I  V     ++ ++DL+ ++ 
Sbjct: 406 MKLLVSLLTRSLIYLLAELIELLTPIWSAFAEIGVQICMITRVVVQPFWSLLLDLVDVLF 465

Query: 121 WPMWFIISMVWTIATSVLYPIFWILWEIFYAPIRMVLAIASFIALIGAWISELIGDLWRS 180
            P+  + S + T+ T +L   F I+ ++   P +  L +A F+A   + I  +   L R+
Sbjct: 466 SPLELLYSCILTLVTFIL-SFFDIIRDLLLYPSQGCLLLAKFLA---SAIINIYMMLART 521

Query: 181 VSCIFR-----VASATEATISTYEVSMWRSLWNDLFSQVFRALRSILNGFVAFFTACNRH 235
           +  IF      + S  +A  S+ ++S W SLWNDLFS+VFR+LR+I+ G VAF  +CNRH
Sbjct: 522 L-MIFSNGKGMLTSFAQAKPSSSDISFWHSLWNDLFSKVFRSLRNIICGLVAFLASCNRH 580

Query: 236 RLSIYNHIQEFIRR 249
           RLS YNHI+E +R 
Sbjct: 581 RLSTYNHIKEIVRH 594