Jatropha Genome Database

JcCB0133991.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0133991.20 - phase: 0 /partial
         (277 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30170.m014158 conserved hypothetical protein                          469   e-133

>30170.m014158 conserved hypothetical protein
          Length = 542

 Score =  469 bits (1206), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 227/284 (79%), Positives = 241/284 (84%), Gaps = 7/284 (2%)

Query: 1   HDKLEPSTSSQGATPPREPSGNHLLTCGRAWAISLTLWSEMSSEILKPYLPSDGDGTL-- 58
            DK EPSTSS G   PRE    +LLT GRAWAISL L    S+EILKPYLPSD  G    
Sbjct: 259 EDKSEPSTSSLGEISPREACNAYLLTLGRAWAISLNLRGTPSAEILKPYLPSDDIGAFEN 318

Query: 59  -----SLHGRGLNRFWSNIEGYHGPLLFLVSATSGNAHEDNTNVRKWIIGALTQQGFENK 113
                SL+GRGLNRFWSNIEGYHGPLL LV ATSG+AHED+T  RKWIIGALTQQGFEN+
Sbjct: 319 LLYRSSLNGRGLNRFWSNIEGYHGPLLLLVLATSGDAHEDSTGDRKWIIGALTQQGFENR 378

Query: 114 DMFYGSSGKLYAICPIFHTFSHSGKDKNFVYSHLHPTRRAYEPHPKPVGIAFGGTIGNER 173
           D+FYGSSG LYAICP+FH FS  GKDKNFVYSHLHPT R YEPHPKPVGIAFGGTIGNER
Sbjct: 379 DLFYGSSGSLYAICPVFHAFSPLGKDKNFVYSHLHPTSRVYEPHPKPVGIAFGGTIGNER 438

Query: 174 IFIDEDFARVTVRHHAVDKTYQPGSIFPSQGFLPVEALISEVEVWGLGGRTAKEVQASYK 233
           IFIDEDFAR+TVRHHA DKTY+ GS+FPSQGFLPVEA I EVEVWGLGG+TAKEVQ SYK
Sbjct: 439 IFIDEDFARITVRHHAGDKTYKHGSLFPSQGFLPVEASILEVEVWGLGGKTAKEVQTSYK 498

Query: 234 KREDLFIEQRRKVDLKTFASWEDSPEKMMMDMMSDPNAVRREDR 277
           +RE+LFIEQRRKVDLKTFASWEDSPEKMMMDMMSDPN VRREDR
Sbjct: 499 RREELFIEQRRKVDLKTFASWEDSPEKMMMDMMSDPNVVRREDR 542