Jatropha Genome Database

JcCB0133481.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0133481.10 - phase: 0 
         (251 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30156.m001718 transcription regulator, putative                        62   2e-10
29842.m003687 transcription regulator, putative                        58   4e-09
30128.m008635 transcription regulator, putative                        54   1e-07

>30156.m001718 transcription regulator, putative
          Length = 383

 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 59/109 (54%), Gaps = 3/109 (2%)

Query: 69  RLWNNEDETVLLSAMINLGIKSGDS--NNVDRLYDHVIKDLHCTTVSKSQLTEKVHRLRK 126
           RLW+ +DE V+L+ +     + G    + +   Y+++ K LH   VS++QL +K+ RL+K
Sbjct: 153 RLWSEDDEIVVLNGLSQYKSEKGADPYSEMGAFYEYIKKSLHVD-VSRNQLIDKIRRLKK 211

Query: 127 KYKKNLVRGGRDSLSGKHEIELFDLCHQLWEKSSQILAITAISAPAGGG 175
           KY  N+ RG     +  H+ + F L  +LW K+ Q +        AGGG
Sbjct: 212 KYGNNMKRGQDPVFTKSHDEKSFQLSKKLWGKNDQNVNNDNDDNIAGGG 260


>29842.m003687 transcription regulator, putative
          Length = 391

 Score = 58.2 bits (139), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 60/109 (55%), Gaps = 5/109 (4%)

Query: 69  RLWNNEDETVLLSAMINLGIKSG--DSNNVDRLYDHVIKDLHCTTVSKSQLTEKVHRLRK 126
           RLW+ +DE V+L  +I+   K G   + ++   +D++ K LH   VS +QL +K+ RL+K
Sbjct: 170 RLWSEDDEIVVLKGIIDFIEKKGVDPAKDIISFFDYIKKSLHFD-VSLNQLKDKIWRLKK 228

Query: 127 KYKKNL--VRGGRDSLSGKHEIELFDLCHQLWEKSSQILAITAISAPAG 173
           K++ N+   +G   + S  H+ + FDL  ++W     I A  +   P G
Sbjct: 229 KFENNVKGKKGEDKTFSKSHDQKSFDLSKKIWGTDGIIGASDSSIKPNG 277


>30128.m008635 transcription regulator, putative
          Length = 415

 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 52/97 (53%), Gaps = 3/97 (3%)

Query: 69  RLWNNEDETVLLSAMINLGIKSGDSNNVDRLYDHVIKDLHCTTVSKSQLTEKVHRLRKKY 128
           RLW +EDE  LL   ++   + G +++   L+   IK       +K+QL EK+ RL+KKY
Sbjct: 136 RLWTDEDEIELLQGFLDYTTQRGSNHHDTALFYDQIKSKLQLDFNKNQLVEKLRRLKKKY 195

Query: 129 KKNL--VRGGRD-SLSGKHEIELFDLCHQLWEKSSQI 162
           +  L  +  G+D S    H+   F++  ++W  + +I
Sbjct: 196 RNVLSKISSGKDFSFKSPHDQATFEISRKIWSSTGKI 232