Jatropha Genome Database

JcCB0131911.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0131911.10 + phase: 1 /partial
         (198 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30075.m001169 hypothetical protein                                    139   8e-34

>30075.m001169 hypothetical protein
          Length = 618

 Score =  139 bits (350), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 106/273 (38%), Positives = 133/273 (48%), Gaps = 81/273 (29%)

Query: 1   NVLSNTIRNLDSEL-DSTKDTSVASLSKSKSNFLSPLERNWR----------GSTGVVMF 49
           NVL++TIRNLD EL +ST   S A+L KS+S+ +SP ERNWR           STGV   
Sbjct: 352 NVLAHTIRNLDGELQESTDYKSEAALLKSRSSLVSPAERNWRRRPETEVAQVKSTGVAAL 411

Query: 50  S---QPRAEGHRRRTYTGDDDTC-------LGKNSSTNSANKSWADIVEEEENQKLL--- 96
           +   QP+ EGHR R Y+  D          L + S    A      I+ E E+Q +L   
Sbjct: 412 NQIPQPKIEGHRLRCYSEYDGYAHNVLKHDLQQASWRRHAKGISDPIISETEDQIMLVDE 471

Query: 97  -------------------TGK--------------------------DLSPCFDD---- 107
                              +GK                          D++   DD    
Sbjct: 472 PREFETSICRAEQASAVNVSGKVKSTDSVAHSCLEKNSSVKSASKSWADMAEEEDDLSPY 531

Query: 108 --TWGYENEYNDENQDSNIIHNQTCPKSPVDTITEKLEACDIKDGYNTFNHSVSPRNPTA 165
             +W YE E  DEN +SNI+H   CPKSP  TI++KLEA D++DG       VSPRNPT 
Sbjct: 532 FDSWNYE-ECTDENLNSNIVHQSLCPKSPTVTISQKLEAFDLRDG-----SVVSPRNPTV 585

Query: 166 RRSLCFNGNQDYNMRKKNRLQVFRDITSTLESP 198
           RRSLCF+  +   MRK NRLQVFRDIT T +SP
Sbjct: 586 RRSLCFDAKKGPLMRKNNRLQVFRDITPTPDSP 618